edu.mssm.crover.webservices.rbde
Class CustomizedDiagramImpl1_1

java.lang.Object
  |
  +--edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl1_0
        |
        +--edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl1_1

All Implemented Interfaces:

CustomizedDiagram, java.io.Serializable

public class CustomizedDiagramImpl1_1

extends CustomizedDiagramImpl1_0

Encapsulates all necessary diagram components for storage. Contains functionality to rebuild or repaint the diagram. Due to the transfer mechanism to support different versions of the interface/implementation, this class must NOT use private fiels or methods. The higher level of restriction is protected (everything should be available to a subclass).

See Also:

Serialized Form

Field Summary

protected int

test_int

Fields inherited from class edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl1_0

cacs, defaultColorScheme, diagram, elipsOK, image, image_scale_factor, image_time_adjusted_in_advance, last_image_time, need_rebuild_image, need_repaint_image, Nterm_dir, sc, sequence

Constructor Summary

CustomizedDiagramImpl1_1()
Default constructor.

CustomizedDiagramImpl1_1(AnnotatedBioSequence sequence)
Constructor from a sequence.

Method Summary

int	getTestInt()
void	postTransfer(UpgradableObject source) Post transfer operation.
protected void	resetAll() Resets the state of the all variables.
void	transfer(UpgradableObject destination) Transfers the content of this CustomizedDiagram to the destination.

Methods inherited from class edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl1_0

adjustLoopParameters, calculateElipses, dispose, flush, fullGC, getColorAnnotationsColorScheme, getDefaultColorScheme, getDiagram, getElipses, getImage, getImageScaleFactor, getImageTime, getNtermDirection, getSequence, obtainServletCentral, rebuildImage, repaintImage, resetTransient, scaleImage, setDefaultColorScheme, setElipses, setImageScaleFactor, setImageTime, setNeedRebuildImage, setNeedRepaintImage, setNtermDirectionDown, setNtermDirectionUp, setSequence

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

test_int

protected int test_int

Constructor Detail

CustomizedDiagramImpl1_1

public CustomizedDiagramImpl1_1(AnnotatedBioSequence sequence)

Constructor from a sequence. Creates a CustomizedDiagram initialized with a sequence.

CustomizedDiagramImpl1_1

public CustomizedDiagramImpl1_1()

Default constructor. Creates an empty CustomizedDiagram - no annotated sequence, nothing.

Method Detail

resetAll

protected void resetAll()

Resets the state of the all variables. Called by the constructor to factorize operations.

Overrides:

resetAll in class CustomizedDiagramImpl1_0

See Also:

#resetTransient.

getTestInt

public int getTestInt()

transfer

public void transfer(UpgradableObject destination)

Transfers the content of this CustomizedDiagram to the destination.

Overrides:

transfer in class CustomizedDiagramImpl1_0

postTransfer

public void postTransfer(UpgradableObject source)

Post transfer operation. Called by the source on the destination to give it an opportunity to initialize the part of its state that is unknown to the source. The destination can use the source reference to obtain any required extra information that was not initialized during #transfer().

Overrides:

postTransfer in class CustomizedDiagramImpl1_0