edu.mssm.crover.webapps.dimlib.util
Class Setup

java.lang.Object
  |
  +--edu.mssm.crover.webapps.dimlib.util.Setup

public class Setup

extends java.lang.Object

Constructor Summary

Setup()

Method Summary

java.util.Vector	getAllowedDatabases() Returns a Vector of the databases that are recognised by the database.
java.io.BufferedReader	getAllowedOrganismList() Returns a BufferedReader of the organism list file.
java.util.Hashtable	getAllowedOrganisms() Returns a Hashtable of the organisms recognised by the database.
java.util.Hashtable	getColors()
java.util.HashMap	getCuratedList()
java.util.Hashtable	getDatabaseConcordance()
java.lang.String	getGpcrdbColour(java.lang.String letter) Returns the hex colour for that residue in the GPCRDB colouring scheme.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Setup

public Setup()

Method Detail

getAllowedDatabases

public java.util.Vector getAllowedDatabases()

Returns a Vector of the databases that are recognised by the database. Finds the list in the context parameter dimlib.database.list.

getDatabaseConcordance

public java.util.Hashtable getDatabaseConcordance()

getColors

public java.util.Hashtable getColors()

getAllowedOrganisms

public java.util.Hashtable getAllowedOrganisms()

Returns a Hashtable of the organisms recognised by the database. The Hashtable includes the common English name, and the Latin name. It is found in the file specified by the context parameter dimlib.organism.list.

getAllowedOrganismList

public java.io.BufferedReader getAllowedOrganismList()
                                              throws java.lang.NullPointerException

Returns a BufferedReader of the organism list file. The organiam list file is formatted as two columns: the Latin name, and the common or English name.

java.lang.NullPointerException

getGpcrdbColour

public java.lang.String getGpcrdbColour(java.lang.String letter)

Returns the hex colour for that residue in the GPCRDB colouring scheme.

getCuratedList

public java.util.HashMap getCuratedList()