edu.mssm.crover.webapps.dimlib.util
Class SNPValidator

java.lang.Object
  |
  +--edu.mssm.crover.webapps.dimlib.util.SNPValidator

public class SNPValidator
extends java.lang.Object

Validates the SNP inputted by the user. Checks that (flankingSeqBefore.length() + flankingSeqAfter.length() >= 30) Tries to match this sequence to the protein sequence (use BLAST) Sets the aaPos and aaFrame (should we have a temporary one until confirmed?)


Constructor Summary
SNPValidator()
           
 
Method Summary
 boolean validate(SNP snp)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SNPValidator

public SNPValidator()
Method Detail

validate

public boolean validate(SNP snp)
                 throws InvalidSNPException
InvalidSNPException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.