edu.mssm.crover.webapps.dimlib.util
Class ExportXML

java.lang.Object
  |
  +--edu.mssm.crover.webapps.dimlib.util.ExportXML

public class ExportXML

extends java.lang.Object

Field Summary

protected javax.jdo.PersistenceManager

pm

Constructor Summary

ExportXML()

Method Summary

void	exportDatabase() Exports the whole database as one large file.
java.lang.String	exportMutant(MutantProtein mp) Returns as a String the XML file for a single mutant.
java.lang.String	exportProtein(WildTypeProtein wtp) Returns as a String the XML file for a single wildtype protein, with all associated information (all mutants and SNPs).
java.lang.String	exportSNP(SNP snp) Returns as a String the XML file for a single SNP.
void	exportXML() Exports the whole database as a series of individual files, one for every protein in the database.
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

pm

protected javax.jdo.PersistenceManager pm

Constructor Detail

ExportXML

public ExportXML()

Method Detail

exportXML

public void exportXML()

Exports the whole database as a series of individual files, one for every protein in the database.

exportDatabase

public void exportDatabase()

Exports the whole database as one large file. (not implemented yet - need to change dimlib.xsl file to allow multiple proteins, and therefore would have to change all import methods).

exportProtein

public java.lang.String exportProtein(WildTypeProtein wtp)

Returns as a String the XML file for a single wildtype protein, with all associated information (all mutants and SNPs).

exportSNP

public java.lang.String exportSNP(SNP snp)

Returns as a String the XML file for a single SNP.

exportMutant

public java.lang.String exportMutant(MutantProtein mp)

Returns as a String the XML file for a single mutant.

main

public static void main(java.lang.String[] args)