edu.mssm.crover.webapps.dimlib.parsers.xml
Class Protein

java.lang.Object
  |
  +--edu.mssm.crover.webapps.dimlib.parsers.xml.Protein

All Implemented Interfaces:

java.io.Serializable

public class Protein

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Protein()

Method Summary

Dblinks	getDblinks()
java.lang.String	getFamily()
Mutants	getMutants()
java.lang.String	getName()
java.lang.String	getOrganism()
java.lang.String	getSequence()
Snps	getSnps()
Tm_Domain	getTm_Domain()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
void	setDblinks(Dblinks dblinks)
void	setFamily(java.lang.String family)
void	setMutants(Mutants mutants)
void	setName(java.lang.String name)
void	setOrganism(java.lang.String organism)
void	setSequence(java.lang.String sequence)
void	setSnps(Snps snps)
void	setTm_Domain(Tm_Domain tm_Domain)
static Protein	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Protein

public Protein()

Method Detail

getDblinks

public Dblinks getDblinks()

getFamily

public java.lang.String getFamily()

getMutants

public Mutants getMutants()

getName

public java.lang.String getName()

getOrganism

public java.lang.String getOrganism()

getSequence

public java.lang.String getSequence()

getSnps

public Snps getSnps()

getTm_Domain

public Tm_Domain getTm_Domain()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

setDblinks

public void setDblinks(Dblinks dblinks)

Parameters:

dblinks -

setFamily

public void setFamily(java.lang.String family)

Parameters:

family -

setMutants

public void setMutants(Mutants mutants)

Parameters:

mutants -

setName

public void setName(java.lang.String name)

Parameters:

name -

setOrganism

public void setOrganism(java.lang.String organism)

Parameters:

organism -

setSequence

public void setSequence(java.lang.String sequence)

Parameters:

sequence -

setSnps

public void setSnps(Snps snps)

Parameters:

snps -

setTm_Domain

public void setTm_Domain(Tm_Domain tm_Domain)

Parameters:

tm_Domain -

unmarshal

public static Protein unmarshal(java.io.Reader reader)
                         throws org.exolab.castor.xml.MarshalException,
                                org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException