edu.mssm.crover.webapps.dimlib.parsers.xml
Class Annotations

java.lang.Object
  |
  +--edu.mssm.crover.webapps.dimlib.parsers.xml.Annotations

All Implemented Interfaces:

java.io.Serializable

public class Annotations

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Annotations()

Method Summary

void	addPhenotype(int index, java.lang.String vPhenotype)
void	addPhenotype(java.lang.String vPhenotype)
void	clearPhenotype()
java.util.Enumeration	enumeratePhenotype()
java.lang.String	getDescription()
java.lang.String[]	getPhenotype()
java.lang.String	getPhenotype(int index)
int	getPhenotypeCount()
References	getReferences()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
boolean	removePhenotype(java.lang.String vPhenotype)
void	setDescription(java.lang.String description)
void	setPhenotype(int index, java.lang.String vPhenotype)
void	setPhenotype(java.lang.String[] phenotypeArray)
void	setReferences(References references)
static Annotations	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Annotations

public Annotations()

Method Detail

addPhenotype

public void addPhenotype(java.lang.String vPhenotype)
                  throws java.lang.IndexOutOfBoundsException

Parameters:

vPhenotype -

java.lang.IndexOutOfBoundsException

addPhenotype

public void addPhenotype(int index,
                         java.lang.String vPhenotype)
                  throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vPhenotype -

java.lang.IndexOutOfBoundsException

clearPhenotype

public void clearPhenotype()

enumeratePhenotype

public java.util.Enumeration enumeratePhenotype()

getDescription

public java.lang.String getDescription()

getPhenotype

public java.lang.String getPhenotype(int index)
                              throws java.lang.IndexOutOfBoundsException

Parameters:

index -

java.lang.IndexOutOfBoundsException

getPhenotype

public java.lang.String[] getPhenotype()

getPhenotypeCount

public int getPhenotypeCount()

getReferences

public References getReferences()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

removePhenotype

public boolean removePhenotype(java.lang.String vPhenotype)

Parameters:

vPhenotype -

setDescription

public void setDescription(java.lang.String description)

Parameters:

description -

setPhenotype

public void setPhenotype(int index,
                         java.lang.String vPhenotype)
                  throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vPhenotype -

java.lang.IndexOutOfBoundsException

setPhenotype

public void setPhenotype(java.lang.String[] phenotypeArray)

Parameters:

phenotypeArray -

setReferences

public void setReferences(References references)

Parameters:

references -

unmarshal

public static Annotations unmarshal(java.io.Reader reader)
                             throws org.exolab.castor.xml.MarshalException,
                                    org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException