edu.mssm.crover.webapps.dimlib.lw
Class AlignmentViewer

java.lang.Object
  |
  +--cuttingedge.lw.form.Widget
        |
        +--cuttingedge.lw.form.Form
              |
              +--edu.mssm.crover.webapps.dimlib.lw.DiMLibForm
                    |
                    +--edu.mssm.crover.webapps.dimlib.lw.AlignmentViewer
All Implemented Interfaces:
java.io.Serializable, cuttingedge.lw.form.Visitee

public class AlignmentViewer
extends DiMLibForm

See Also:
Serialized Form

Field Summary
protected  javax.jdo.PersistenceManager pm
           
 
Fields inherited from class edu.mssm.crover.webapps.dimlib.lw.DiMLibForm
session
 
Fields inherited from class cuttingedge.lw.form.Widget
NAME_SEPARATOR
 
Constructor Summary
AlignmentViewer(cuttingedge.lw.ServletSession session)
           
AlignmentViewer(cuttingedge.lw.ServletSession session, boolean confirmed, int num_res, java.lang.String size)
           
AlignmentViewer(cuttingedge.lw.ServletSession session, boolean confirmed, int num_res, java.lang.String size, java.lang.String style, boolean links)
           
AlignmentViewer(cuttingedge.lw.ServletSession session, int num_res, java.lang.String size)
           
AlignmentViewer(cuttingedge.lw.ServletSession session, java.lang.String[] sqs)
           
AlignmentViewer(cuttingedge.lw.ServletSession session, java.lang.String[] sqs, boolean hd)
           
 
Method Summary
 void addSubSelection(int i)
           
 boolean getConfirmed()
           
 boolean getUseDSI()
           
 void setConfirmed(boolean confirmed)
           
 void setUseDSI(boolean useDSI)
           
 
Methods inherited from class edu.mssm.crover.webapps.dimlib.lw.DiMLibForm
assertLog, debug, debug, error, error, exit, getAllowedDatabases, getAllowedOrganismList, getAllowedOrganisms, getPersistenceManager, info, log, viewHelp, viewHelp, viewXML, warn
 
Methods inherited from class cuttingedge.lw.form.Form
accept, add, getByName, getChildren, getFormManager, remove, removeAll, removeByName, show
 
Methods inherited from class cuttingedge.lw.form.Widget
getCategory, getFullName, getLabel, getName, getParent, getProperties, getProperty, hasProperties, setCategory, setLabel, setName, setProperty
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

pm

protected javax.jdo.PersistenceManager pm
Constructor Detail

AlignmentViewer

public AlignmentViewer(cuttingedge.lw.ServletSession session,
                       java.lang.String[] sqs,
                       boolean hd)

AlignmentViewer

public AlignmentViewer(cuttingedge.lw.ServletSession session,
                       java.lang.String[] sqs)

AlignmentViewer

public AlignmentViewer(cuttingedge.lw.ServletSession session)

AlignmentViewer

public AlignmentViewer(cuttingedge.lw.ServletSession session,
                       int num_res,
                       java.lang.String size)

AlignmentViewer

public AlignmentViewer(cuttingedge.lw.ServletSession session,
                       boolean confirmed,
                       int num_res,
                       java.lang.String size)

AlignmentViewer

public AlignmentViewer(cuttingedge.lw.ServletSession session,
                       boolean confirmed,
                       int num_res,
                       java.lang.String size,
                       java.lang.String style,
                       boolean links)
Parameters:
num_res - number of residues to display per line
size - font size of residues (large -> small)
style - font style of residues (plain, bold, svg)
links - whether links should be displayed or not
Method Detail

addSubSelection

public void addSubSelection(int i)

getConfirmed

public boolean getConfirmed()

setConfirmed

public void setConfirmed(boolean confirmed)

getUseDSI

public boolean getUseDSI()

setUseDSI

public void setUseDSI(boolean useDSI)


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.