Hierarchy For Package edu.mssm.crover.util

Package Hierarchies:

All Packages

Class Hierarchy

• class java.lang.Object
  • class edu.mssm.crover.util.AlignmentReader
  • class edu.mssm.crover.util.cd2ps
  • class edu.mssm.crover.util.ChunkIterator
  • class edu.mssm.crover.util.cleanAlignment
  • class edu.mssm.crover.util.CodonTable
  • class edu.mssm.crover.util.CommandLineOptions
  • class edu.mssm.crover.util.CompareSeqSets
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Canvas (implements javax.accessibility.Accessible)
      • class edu.mssm.crover.util.NotAVisualBean (implements java.beans.Visibility)
        • class edu.mssm.crover.util.FetchURL (implements java.beans.PropertyChangeListener, java.io.Serializable)
        • class edu.mssm.crover.util.MutationsToURLs (implements java.beans.PropertyChangeListener, java.io.Serializable)
  • class edu.mssm.crover.util.DayhoffMatrix (implements edu.mssm.crover.util.ResidueExchangeMatrix)
  • class edu.mssm.crover.util.extract
  • class edu.mssm.crover.util.FastaFormat
  • class edu.mssm.crover.util.FragmentIdentityScoreEngine (implements edu.mssm.crover.util.ScoreEngine)
  • class edu.mssm.crover.util.GenScan (implements edu.mssm.crover.util.GeneProductPredictor)
  • class edu.mssm.crover.util.GetCeleraSeq
  • class edu.mssm.crover.util.Inspect
  • class edu.mssm.crover.util.MotifFinder
  • class edu.mssm.crover.util.MultiplePartFileIterator
  • class edu.mssm.crover.util.MutationToUrlConverter
  • class edu.mssm.crover.util.NCBISequences
  • class edu.mssm.crover.util.PhdHtmTM
  • class edu.mssm.crover.util.RemoveHTMLTags (implements java.io.Serializable)
  • class edu.mssm.crover.util.ScanForTms
  • class edu.mssm.crover.util.SequenceChunkIterator
  • class edu.mssm.crover.util.sid
  • class edu.mssm.crover.util.SimpleTM
  • class edu.mssm.crover.util.smask
  • class edu.mssm.crover.util.SosuiResult
  • class edu.mssm.crover.util.splitfile
  • class edu.mssm.crover.util.strim
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class edu.mssm.crover.util.InvalidMotifException
      • class edu.mssm.crover.util.UnsupportedOrganism
  • class edu.mssm.crover.util.tidyHD
  • class edu.mssm.crover.util.tidySeq

Interface Hierarchy

• interface edu.mssm.crover.util.GeneProductPredictor
• interface edu.mssm.crover.util.ResidueExchangeMatrix
• interface edu.mssm.crover.util.ScoreEngine
• interface edu.mssm.crover.util.TmPredictor