edu.mssm.crover.util.msaviz
Class SVGAlignmentFormatter

java.lang.Object
  |
  +--edu.mssm.crover.util.msaviz.SVGAlignmentFormatter

All Implemented Interfaces:

AlignmentFormatter

public class SVGAlignmentFormatter

extends java.lang.Object

implements AlignmentFormatter

Constructor Summary

SVGAlignmentFormatter()

Method Summary

void	begin(java.io.Writer writer)
void	end()
void	writeLinkedResidue(char residue, java.lang.String url)
void	writeNewLine()
void	writeResidue(char residue)
void	writeSpace()
void	writeText(java.lang.String text)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SVGAlignmentFormatter

public SVGAlignmentFormatter()

Method Detail

begin

public void begin(java.io.Writer writer)
           throws java.io.IOException

Specified by:

begin in interface AlignmentFormatter

java.io.IOException

writeResidue

public void writeResidue(char residue)
                  throws java.io.IOException

Specified by:

writeResidue in interface AlignmentFormatter

java.io.IOException

writeLinkedResidue

public void writeLinkedResidue(char residue,
                               java.lang.String url)
                        throws java.io.IOException

Specified by:

writeLinkedResidue in interface AlignmentFormatter

java.io.IOException

writeText

public void writeText(java.lang.String text)
               throws java.io.IOException

Specified by:

writeText in interface AlignmentFormatter

java.io.IOException

writeSpace

public void writeSpace()
                throws java.io.IOException

Specified by:

writeSpace in interface AlignmentFormatter

java.io.IOException

writeNewLine

public void writeNewLine()
                  throws java.io.IOException

Specified by:

writeNewLine in interface AlignmentFormatter

java.io.IOException

end

public void end()
         throws java.io.IOException

Specified by:

end in interface AlignmentFormatter

java.io.IOException