edu.mssm.crover.util.msaviz
Class HTMLAlignmentFormatter

java.lang.Object
  |
  +--edu.mssm.crover.util.msaviz.HTMLAlignmentFormatter
All Implemented Interfaces:
AlignmentFormatter

public class HTMLAlignmentFormatter
extends java.lang.Object
implements AlignmentFormatter


Constructor Summary
HTMLAlignmentFormatter()
           
 
Method Summary
 void begin(java.io.Writer writer)
           
 void end()
           
 void writeLinkedResidue(char residue, java.lang.String url)
           
 void writeNewLine()
           
 void writeResidue(char residue)
           
 void writeSpace()
           
 void writeText(java.lang.String text)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

HTMLAlignmentFormatter

public HTMLAlignmentFormatter()
Method Detail

begin

public void begin(java.io.Writer writer)
           throws java.io.IOException
Specified by:
begin in interface AlignmentFormatter
java.io.IOException

writeResidue

public void writeResidue(char residue)
                  throws java.io.IOException
Specified by:
writeResidue in interface AlignmentFormatter
java.io.IOException

writeSpace

public void writeSpace()
                throws java.io.IOException
Specified by:
writeSpace in interface AlignmentFormatter
java.io.IOException

writeNewLine

public void writeNewLine()
                  throws java.io.IOException
Specified by:
writeNewLine in interface AlignmentFormatter
java.io.IOException

writeText

public void writeText(java.lang.String text)
               throws java.io.IOException
Specified by:
writeText in interface AlignmentFormatter
java.io.IOException

end

public void end()
         throws java.io.IOException
Specified by:
end in interface AlignmentFormatter
java.io.IOException

writeLinkedResidue

public void writeLinkedResidue(char residue,
                               java.lang.String url)
                        throws java.io.IOException
Specified by:
writeLinkedResidue in interface AlignmentFormatter
java.io.IOException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.