edu.mssm.crover.util.msaviz
Interface AlignmentFormatter

All Known Implementing Classes:

HTMLAlignmentFormatter, SVGAlignmentFormatter, TextAlignmentFormatter

public interface AlignmentFormatter

Method Summary

void	begin(java.io.Writer writer)
void	end()
void	writeLinkedResidue(char residue, java.lang.String url)
void	writeNewLine()
void	writeResidue(char residue)
void	writeSpace()
void	writeText(java.lang.String text)

Method Detail

begin

public void begin(java.io.Writer writer)
           throws java.io.IOException

java.io.IOException

writeResidue

public void writeResidue(char residue)
                  throws java.io.IOException

java.io.IOException

writeLinkedResidue

public void writeLinkedResidue(char residue,
                               java.lang.String url)
                        throws java.io.IOException

java.io.IOException

writeText

public void writeText(java.lang.String text)
               throws java.io.IOException

java.io.IOException

writeSpace

public void writeSpace()
                throws java.io.IOException

java.io.IOException

writeNewLine

public void writeNewLine()
                  throws java.io.IOException

java.io.IOException

end

public void end()
         throws java.io.IOException

java.io.IOException