edu.mssm.crover.tools.tissue.xml
Class QuerySequence

java.lang.Object
  |
  +--edu.mssm.crover.tools.tissue.xml.QuerySequence

All Implemented Interfaces:

java.io.Serializable

public class QuerySequence

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

QuerySequence()

Method Summary

void	addHit(Hit vHit)
void	addHit(int index, Hit vHit)
void	clearHit()
java.util.Enumeration	enumerateHit()
java.lang.String	getAc()
Hit[]	getHit()
Hit	getHit(int index)
int	getHitCount()
java.lang.String	getResidueCodes()
java.lang.String	getType()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
boolean	removeHit(Hit vHit)
void	setAc(java.lang.String ac)
void	setHit(Hit[] hitArray)
void	setHit(int index, Hit vHit)
void	setResidueCodes(java.lang.String residueCodes)
void	setType(java.lang.String type)
static QuerySequence	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QuerySequence

public QuerySequence()

Method Detail

addHit

public void addHit(Hit vHit)
            throws java.lang.IndexOutOfBoundsException

Parameters:

vHit -

java.lang.IndexOutOfBoundsException

addHit

public void addHit(int index,
                   Hit vHit)
            throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vHit -

java.lang.IndexOutOfBoundsException

clearHit

public void clearHit()

enumerateHit

public java.util.Enumeration enumerateHit()

getAc

public java.lang.String getAc()

getHit

public Hit getHit(int index)
           throws java.lang.IndexOutOfBoundsException

Parameters:

index -

java.lang.IndexOutOfBoundsException

getHit

public Hit[] getHit()

getHitCount

public int getHitCount()

getResidueCodes

public java.lang.String getResidueCodes()

getType

public java.lang.String getType()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

removeHit

public boolean removeHit(Hit vHit)

Parameters:

vHit -

setAc

public void setAc(java.lang.String ac)

Parameters:

ac -

setHit

public void setHit(int index,
                   Hit vHit)
            throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vHit -

java.lang.IndexOutOfBoundsException

setHit

public void setHit(Hit[] hitArray)

Parameters:

hitArray -

setResidueCodes

public void setResidueCodes(java.lang.String residueCodes)

Parameters:

residueCodes -

setType

public void setType(java.lang.String type)

Parameters:

type -

unmarshal

public static QuerySequence unmarshal(java.io.Reader reader)
                               throws org.exolab.castor.xml.MarshalException,
                                      org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException