edu.mssm.crover.tools.tissue
Class DbestParser

java.lang.Object
  |
  +--edu.mssm.crover.tools.tissue.DbestParser

public class DbestParser

extends java.lang.Object

Parses dbEST and extract tissue information. Put this information into TissueInfo.

Field Summary

static boolean

doNotAdd

Constructor Summary

DbestParser()

Method Summary

boolean	getMode()
static void	main(java.lang.String[] args)
void	parse(java.io.BufferedReader reader, TissueInfo ti) Parses GenBank dbEST gzipped files.
void	setMode(boolean mode)
void	setModulo(int modulo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

doNotAdd

public static boolean doNotAdd

Constructor Detail

DbestParser

public DbestParser()

Method Detail

setModulo

public void setModulo(int modulo)

getMode

public boolean getMode()

setMode

public void setMode(boolean mode)

parse

public void parse(java.io.BufferedReader reader,
                  TissueInfo ti)
           throws java.io.FileNotFoundException

Parses GenBank dbEST gzipped files. Returns the result in a file.

java.io.FileNotFoundException

main

public static void main(java.lang.String[] args)

See Also:

for an example of use.