edu.mssm.crover.tools.tissue
Class DbestParser

java.lang.Object
  |
  +--edu.mssm.crover.tools.tissue.DbestParser

public class DbestParser
extends java.lang.Object

Parses dbEST and extract tissue information. Put this information into TissueInfo.


Field Summary
static boolean doNotAdd
           
 
Constructor Summary
DbestParser()
           
 
Method Summary
 boolean getMode()
           
static void main(java.lang.String[] args)
           
 void parse(java.io.BufferedReader reader, TissueInfo ti)
          Parses GenBank dbEST gzipped files.
 void setMode(boolean mode)
           
 void setModulo(int modulo)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

doNotAdd

public static boolean doNotAdd
Constructor Detail

DbestParser

public DbestParser()
Method Detail

setModulo

public void setModulo(int modulo)

getMode

public boolean getMode()

setMode

public void setMode(boolean mode)

parse

public void parse(java.io.BufferedReader reader,
                  TissueInfo ti)
           throws java.io.FileNotFoundException
Parses GenBank dbEST gzipped files. Returns the result in a file.

java.io.FileNotFoundException

main

public static void main(java.lang.String[] args)
See Also:
for an example of use.


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.