edu.mssm.crover.tools.blast.parsers.xml.v3
Class Parser

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v3.Parser

public class Parser

extends java.lang.Object

Constructor Summary

Parser()

Method Summary

static void	main(java.lang.String[] args)
BlastOutput	parse(java.io.File xml_source) Parses BLAST XML output.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Parser

public Parser()

Method Detail

parse

public BlastOutput parse(java.io.File xml_source)
                  throws java.io.FileNotFoundException,
                         UnsupportedFormat

Parses BLAST XML output. Returns a memory representation of the result.

Throws:

java.io.FileNotFoundException - Thrown when xml_source cannot be found.

UnsupportedFormat - Thrown when xml_source cannot be validated by the NCBI DTD.

main

public static void main(java.lang.String[] args)