edu.mssm.crover.tools.blast.parsers.xml.v3
Class ParametersType

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v3.ParametersType
All Implemented Interfaces:
java.io.Serializable
Direct Known Subclasses:
Parameters

public abstract class ParametersType
extends java.lang.Object
implements java.io.Serializable

Version:
$Revision$ $Date$
See Also:
Serialized Form

Constructor Summary
ParametersType()
           
 
Method Summary
 void deleteParameters_ScMatch()
           
 void deleteParameters_ScMismatch()
           
 double getParameters_Expect()
           
 java.lang.String getParameters_Filter()
           
 int getParameters_GapExtend()
           
 int getParameters_GapOpen()
           
 java.lang.String getParameters_Matrix()
           
 int getParameters_ScMatch()
           
 int getParameters_ScMismatch()
           
 boolean hasParameters_Expect()
           
 boolean hasParameters_GapExtend()
           
 boolean hasParameters_GapOpen()
           
 boolean hasParameters_ScMatch()
           
 boolean hasParameters_ScMismatch()
           
 boolean isValid()
           
abstract  void marshal(org.xml.sax.DocumentHandler handler)
           
abstract  void marshal(java.io.Writer out)
           
 void setParameters_Expect(double parameters_Expect)
           
 void setParameters_Filter(java.lang.String parameters_Filter)
           
 void setParameters_GapExtend(int parameters_GapExtend)
           
 void setParameters_GapOpen(int parameters_GapOpen)
           
 void setParameters_Matrix(java.lang.String parameters_Matrix)
           
 void setParameters_ScMatch(int parameters_ScMatch)
           
 void setParameters_ScMismatch(int parameters_ScMismatch)
           
 void validate()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ParametersType

public ParametersType()
Method Detail

deleteParameters_ScMatch

public void deleteParameters_ScMatch()

deleteParameters_ScMismatch

public void deleteParameters_ScMismatch()

getParameters_Expect

public double getParameters_Expect()

getParameters_Filter

public java.lang.String getParameters_Filter()

getParameters_GapExtend

public int getParameters_GapExtend()

getParameters_GapOpen

public int getParameters_GapOpen()

getParameters_Matrix

public java.lang.String getParameters_Matrix()

getParameters_ScMatch

public int getParameters_ScMatch()

getParameters_ScMismatch

public int getParameters_ScMismatch()

hasParameters_Expect

public boolean hasParameters_Expect()

hasParameters_GapExtend

public boolean hasParameters_GapExtend()

hasParameters_GapOpen

public boolean hasParameters_GapOpen()

hasParameters_ScMatch

public boolean hasParameters_ScMatch()

hasParameters_ScMismatch

public boolean hasParameters_ScMismatch()

isValid

public boolean isValid()

marshal

public abstract void marshal(java.io.Writer out)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public abstract void marshal(org.xml.sax.DocumentHandler handler)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

setParameters_Expect

public void setParameters_Expect(double parameters_Expect)
Parameters:
parameters_Expect -

setParameters_Filter

public void setParameters_Filter(java.lang.String parameters_Filter)
Parameters:
parameters_Filter -

setParameters_GapExtend

public void setParameters_GapExtend(int parameters_GapExtend)
Parameters:
parameters_GapExtend -

setParameters_GapOpen

public void setParameters_GapOpen(int parameters_GapOpen)
Parameters:
parameters_GapOpen -

setParameters_Matrix

public void setParameters_Matrix(java.lang.String parameters_Matrix)
Parameters:
parameters_Matrix -

setParameters_ScMatch

public void setParameters_ScMatch(int parameters_ScMatch)
Parameters:
parameters_ScMatch -

setParameters_ScMismatch

public void setParameters_ScMismatch(int parameters_ScMismatch)
Parameters:
parameters_ScMismatch -

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.