edu.mssm.crover.tools.blast.parsers.xml.v3
Class Hsp

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v3.HspType
        |
        +--edu.mssm.crover.tools.blast.parsers.xml.v3.Hsp
All Implemented Interfaces:
java.io.Serializable

public class Hsp
extends HspType
implements java.io.Serializable

Version:
$Revision$ $Date$
See Also:
Serialized Form

Constructor Summary
Hsp()
           
 
Method Summary
 boolean isValid()
           
 void marshal(org.xml.sax.DocumentHandler handler)
           
 void marshal(java.io.Writer out)
           
static Hsp unmarshal(java.io.Reader reader)
           
 void validate()
           
 
Methods inherited from class edu.mssm.crover.tools.blast.parsers.xml.v3.HspType
deleteHsp_Gaps, deleteHsp_QueryFrame, getHsp_AlignLen, getHsp_BitScore, getHsp_Evalue, getHsp_Gaps, getHsp_HitFrame, getHsp_HitFrom, getHsp_HitTo, getHsp_Hseq, getHsp_Identity, getHsp_Midline, getHsp_Num, getHsp_Positive, getHsp_Qseq, getHsp_QueryFrame, getHsp_QueryFrom, getHsp_QueryTo, getHsp_Score, hasHsp_AlignLen, hasHsp_Evalue, hasHsp_Gaps, hasHsp_HitFrame, hasHsp_HitFrom, hasHsp_HitTo, hasHsp_Identity, hasHsp_Num, hasHsp_Positive, hasHsp_QueryFrame, hasHsp_QueryFrom, hasHsp_QueryTo, hasHsp_Score, setHsp_AlignLen, setHsp_BitScore, setHsp_Evalue, setHsp_Gaps, setHsp_HitFrame, setHsp_HitFrom, setHsp_HitTo, setHsp_Hseq, setHsp_Identity, setHsp_Midline, setHsp_Num, setHsp_Positive, setHsp_Qseq, setHsp_QueryFrame, setHsp_QueryFrom, setHsp_QueryTo, setHsp_Score
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Hsp

public Hsp()
Method Detail

isValid

public boolean isValid()
Overrides:
isValid in class HspType

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Specified by:
marshal in class HspType
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Specified by:
marshal in class HspType
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

unmarshal

public static Hsp unmarshal(java.io.Reader reader)
                     throws org.exolab.castor.xml.MarshalException,
                            org.exolab.castor.xml.ValidationException
Parameters:
reader -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
Overrides:
validate in class HspType
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.