edu.mssm.crover.tools.blast.parsers.xml.v3
Class Hit_HspsType

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v3.Hit_HspsType
All Implemented Interfaces:
java.io.Serializable
Direct Known Subclasses:
Hit_Hsps

public abstract class Hit_HspsType
extends java.lang.Object
implements java.io.Serializable

Version:
$Revision$ $Date$
See Also:
Serialized Form

Constructor Summary
Hit_HspsType()
           
 
Method Summary
 void addHsp(Hsp vHsp)
           
 void addHsp(int index, Hsp vHsp)
           
 void clearHsp()
           
 java.util.Enumeration enumerateHsp()
           
 Hsp[] getHsp()
           
 Hsp getHsp(int index)
           
 int getHspCount()
           
 boolean isValid()
           
abstract  void marshal(org.xml.sax.DocumentHandler handler)
           
abstract  void marshal(java.io.Writer out)
           
 boolean removeHsp(Hsp vHsp)
           
 void setHsp(Hsp[] hspArray)
           
 void setHsp(int index, Hsp vHsp)
           
 void validate()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Hit_HspsType

public Hit_HspsType()
Method Detail

addHsp

public void addHsp(Hsp vHsp)
            throws java.lang.IndexOutOfBoundsException
Parameters:
vHsp -
java.lang.IndexOutOfBoundsException

addHsp

public void addHsp(int index,
                   Hsp vHsp)
            throws java.lang.IndexOutOfBoundsException
Parameters:
index -
vHsp -
java.lang.IndexOutOfBoundsException

clearHsp

public void clearHsp()

enumerateHsp

public java.util.Enumeration enumerateHsp()

getHsp

public Hsp getHsp(int index)
           throws java.lang.IndexOutOfBoundsException
Parameters:
index -
java.lang.IndexOutOfBoundsException

getHsp

public Hsp[] getHsp()

getHspCount

public int getHspCount()

isValid

public boolean isValid()

marshal

public abstract void marshal(java.io.Writer out)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public abstract void marshal(org.xml.sax.DocumentHandler handler)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

removeHsp

public boolean removeHsp(Hsp vHsp)
Parameters:
vHsp -

setHsp

public void setHsp(int index,
                   Hsp vHsp)
            throws java.lang.IndexOutOfBoundsException
Parameters:
index -
vHsp -
java.lang.IndexOutOfBoundsException

setHsp

public void setHsp(Hsp[] hspArray)
Parameters:
hspArray -

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.