edu.mssm.crover.tools.blast.parsers.xml.v3
Class HitType

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v3.HitType
All Implemented Interfaces:
java.io.Serializable
Direct Known Subclasses:
Hit

public abstract class HitType
extends java.lang.Object
implements java.io.Serializable

Version:
$Revision$ $Date$
See Also:
Serialized Form

Constructor Summary
HitType()
           
 
Method Summary
 java.lang.String getHit_Accession()
           
 java.lang.String getHit_Def()
           
 Hit_Hsps getHit_Hsps()
           
 java.lang.String getHit_Id()
           
 int getHit_Len()
           
 int getHit_Num()
           
 boolean hasHit_Len()
           
 boolean hasHit_Num()
           
 boolean isValid()
           
abstract  void marshal(org.xml.sax.DocumentHandler handler)
           
abstract  void marshal(java.io.Writer out)
           
 void setHit_Accession(java.lang.String hit_Accession)
           
 void setHit_Def(java.lang.String hit_Def)
           
 void setHit_Hsps(Hit_Hsps hit_Hsps)
           
 void setHit_Id(java.lang.String hit_Id)
           
 void setHit_Len(int hit_Len)
           
 void setHit_Num(int hit_Num)
           
 void validate()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

HitType

public HitType()
Method Detail

getHit_Accession

public java.lang.String getHit_Accession()

getHit_Def

public java.lang.String getHit_Def()

getHit_Hsps

public Hit_Hsps getHit_Hsps()

getHit_Id

public java.lang.String getHit_Id()

getHit_Len

public int getHit_Len()

getHit_Num

public int getHit_Num()

hasHit_Len

public boolean hasHit_Len()

hasHit_Num

public boolean hasHit_Num()

isValid

public boolean isValid()

marshal

public abstract void marshal(java.io.Writer out)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public abstract void marshal(org.xml.sax.DocumentHandler handler)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

setHit_Accession

public void setHit_Accession(java.lang.String hit_Accession)
Parameters:
hit_Accession -

setHit_Def

public void setHit_Def(java.lang.String hit_Def)
Parameters:
hit_Def -

setHit_Hsps

public void setHit_Hsps(Hit_Hsps hit_Hsps)
Parameters:
hit_Hsps -

setHit_Id

public void setHit_Id(java.lang.String hit_Id)
Parameters:
hit_Id -

setHit_Len

public void setHit_Len(int hit_Len)
Parameters:
hit_Len -

setHit_Num

public void setHit_Num(int hit_Num)
Parameters:
hit_Num -

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.