edu.mssm.crover.tools.blast.parsers.xml.v3
Class BlastOutput

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput
All Implemented Interfaces:
java.io.Serializable

public class BlastOutput
extends java.lang.Object
implements java.io.Serializable

Version:
$Revision$ $Date$
See Also:
Serialized Form

Constructor Summary
BlastOutput()
           
 
Method Summary
 java.lang.String getBlastOutput_Db()
           
 BlastOutput_Iterations getBlastOutput_Iterations()
           
 BlastOutput_Param getBlastOutput_Param()
           
 java.lang.String getBlastOutput_Program()
           
 java.lang.String getBlastOutput_QueryDef()
           
 java.lang.String getBlastOutput_QueryID()
           
 int getBlastOutput_QueryLen()
           
 java.lang.String getBlastOutput_Reference()
           
 java.lang.String getBlastOutput_Version()
           
 boolean hasBlastOutput_QueryLen()
           
 boolean isValid()
           
 void marshal(org.xml.sax.DocumentHandler handler)
           
 void marshal(java.io.Writer out)
           
 void setBlastOutput_Db(java.lang.String blastOutput_Db)
           
 void setBlastOutput_Iterations(BlastOutput_Iterations blastOutput_Iterations)
           
 void setBlastOutput_Param(BlastOutput_Param blastOutput_Param)
           
 void setBlastOutput_Program(java.lang.String blastOutput_Program)
           
 void setBlastOutput_QueryDef(java.lang.String blastOutput_QueryDef)
           
 void setBlastOutput_QueryID(java.lang.String blastOutput_QueryID)
           
 void setBlastOutput_QueryLen(int blastOutput_QueryLen)
           
 void setBlastOutput_Reference(java.lang.String blastOutput_Reference)
           
 void setBlastOutput_Version(java.lang.String blastOutput_Version)
           
static BlastOutput unmarshal(java.io.Reader reader)
           
 void validate()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BlastOutput

public BlastOutput()
Method Detail

getBlastOutput_Db

public java.lang.String getBlastOutput_Db()

getBlastOutput_Iterations

public BlastOutput_Iterations getBlastOutput_Iterations()

getBlastOutput_Param

public BlastOutput_Param getBlastOutput_Param()

getBlastOutput_Program

public java.lang.String getBlastOutput_Program()

getBlastOutput_QueryDef

public java.lang.String getBlastOutput_QueryDef()

getBlastOutput_QueryID

public java.lang.String getBlastOutput_QueryID()

getBlastOutput_QueryLen

public int getBlastOutput_QueryLen()

getBlastOutput_Reference

public java.lang.String getBlastOutput_Reference()

getBlastOutput_Version

public java.lang.String getBlastOutput_Version()

hasBlastOutput_QueryLen

public boolean hasBlastOutput_QueryLen()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

setBlastOutput_Db

public void setBlastOutput_Db(java.lang.String blastOutput_Db)
Parameters:
blastOutput_Db -

setBlastOutput_Iterations

public void setBlastOutput_Iterations(BlastOutput_Iterations blastOutput_Iterations)
Parameters:
blastOutput_Iterations -

setBlastOutput_Param

public void setBlastOutput_Param(BlastOutput_Param blastOutput_Param)
Parameters:
blastOutput_Param -

setBlastOutput_Program

public void setBlastOutput_Program(java.lang.String blastOutput_Program)
Parameters:
blastOutput_Program -

setBlastOutput_QueryDef

public void setBlastOutput_QueryDef(java.lang.String blastOutput_QueryDef)
Parameters:
blastOutput_QueryDef -

setBlastOutput_QueryID

public void setBlastOutput_QueryID(java.lang.String blastOutput_QueryID)
Parameters:
blastOutput_QueryID -

setBlastOutput_QueryLen

public void setBlastOutput_QueryLen(int blastOutput_QueryLen)
Parameters:
blastOutput_QueryLen -

setBlastOutput_Reference

public void setBlastOutput_Reference(java.lang.String blastOutput_Reference)
Parameters:
blastOutput_Reference -

setBlastOutput_Version

public void setBlastOutput_Version(java.lang.String blastOutput_Version)
Parameters:
blastOutput_Version -

unmarshal

public static BlastOutput unmarshal(java.io.Reader reader)
                             throws org.exolab.castor.xml.MarshalException,
                                    org.exolab.castor.xml.ValidationException
Parameters:
reader -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.