edu.mssm.crover.tools.blast.parsers.xml.v3
Class BlastOutput

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput

All Implemented Interfaces:

java.io.Serializable

public class BlastOutput

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

BlastOutput()

Method Summary

java.lang.String	getBlastOutput_Db()
BlastOutput_Iterations	getBlastOutput_Iterations()
BlastOutput_Param	getBlastOutput_Param()
java.lang.String	getBlastOutput_Program()
java.lang.String	getBlastOutput_QueryDef()
java.lang.String	getBlastOutput_QueryID()
int	getBlastOutput_QueryLen()
java.lang.String	getBlastOutput_Reference()
java.lang.String	getBlastOutput_Version()
boolean	hasBlastOutput_QueryLen()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
void	setBlastOutput_Db(java.lang.String blastOutput_Db)
void	setBlastOutput_Iterations(BlastOutput_Iterations blastOutput_Iterations)
void	setBlastOutput_Param(BlastOutput_Param blastOutput_Param)
void	setBlastOutput_Program(java.lang.String blastOutput_Program)
void	setBlastOutput_QueryDef(java.lang.String blastOutput_QueryDef)
void	setBlastOutput_QueryID(java.lang.String blastOutput_QueryID)
void	setBlastOutput_QueryLen(int blastOutput_QueryLen)
void	setBlastOutput_Reference(java.lang.String blastOutput_Reference)
void	setBlastOutput_Version(java.lang.String blastOutput_Version)
static BlastOutput	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastOutput

public BlastOutput()

Method Detail

getBlastOutput_Db

public java.lang.String getBlastOutput_Db()

getBlastOutput_Iterations

public BlastOutput_Iterations getBlastOutput_Iterations()

getBlastOutput_Param

public BlastOutput_Param getBlastOutput_Param()

getBlastOutput_Program

public java.lang.String getBlastOutput_Program()

getBlastOutput_QueryDef

public java.lang.String getBlastOutput_QueryDef()

getBlastOutput_QueryID

public java.lang.String getBlastOutput_QueryID()

getBlastOutput_QueryLen

public int getBlastOutput_QueryLen()

getBlastOutput_Reference

public java.lang.String getBlastOutput_Reference()

getBlastOutput_Version

public java.lang.String getBlastOutput_Version()

hasBlastOutput_QueryLen

public boolean hasBlastOutput_QueryLen()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

setBlastOutput_Db

public void setBlastOutput_Db(java.lang.String blastOutput_Db)

Parameters:

blastOutput_Db -

setBlastOutput_Iterations

public void setBlastOutput_Iterations(BlastOutput_Iterations blastOutput_Iterations)

Parameters:

blastOutput_Iterations -

setBlastOutput_Param

public void setBlastOutput_Param(BlastOutput_Param blastOutput_Param)

Parameters:

blastOutput_Param -

setBlastOutput_Program

public void setBlastOutput_Program(java.lang.String blastOutput_Program)

Parameters:

blastOutput_Program -

setBlastOutput_QueryDef

public void setBlastOutput_QueryDef(java.lang.String blastOutput_QueryDef)

Parameters:

blastOutput_QueryDef -

setBlastOutput_QueryID

public void setBlastOutput_QueryID(java.lang.String blastOutput_QueryID)

Parameters:

blastOutput_QueryID -

setBlastOutput_QueryLen

public void setBlastOutput_QueryLen(int blastOutput_QueryLen)

Parameters:

blastOutput_QueryLen -

setBlastOutput_Reference

public void setBlastOutput_Reference(java.lang.String blastOutput_Reference)

Parameters:

blastOutput_Reference -

setBlastOutput_Version

public void setBlastOutput_Version(java.lang.String blastOutput_Version)

Parameters:

blastOutput_Version -

unmarshal

public static BlastOutput unmarshal(java.io.Reader reader)
                             throws org.exolab.castor.xml.MarshalException,
                                    org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException