edu.mssm.crover.tools.blast.parsers.xml.v2
Class Hit_HspsType

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v2.Hit_HspsType

All Implemented Interfaces:

java.io.Serializable

Direct Known Subclasses:

Hit_Hsps

public abstract class Hit_HspsType

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision: 1.1 $ $Date: 2003/11/19 18:34:54 $

See Also:

Serialized Form

Constructor Summary

Hit_HspsType()

Method Summary

void	addHsp(Hsp vHsp)
void	addHsp(int index, Hsp vHsp)
void	clearHsp()
java.util.Enumeration	enumerateHsp()
Hsp[]	getHsp()
Hsp	getHsp(int index)
int	getHspCount()
boolean	isValid()
abstract void	marshal(org.xml.sax.DocumentHandler handler)
abstract void	marshal(java.io.Writer out)
boolean	removeHsp(Hsp vHsp)
void	setHsp(Hsp[] hspArray)
void	setHsp(int index, Hsp vHsp)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Hit_HspsType

public Hit_HspsType()

Method Detail

addHsp

public void addHsp(Hsp vHsp)
            throws java.lang.IndexOutOfBoundsException

Parameters:

vHsp -

java.lang.IndexOutOfBoundsException

addHsp

public void addHsp(int index,
                   Hsp vHsp)
            throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vHsp -

java.lang.IndexOutOfBoundsException

clearHsp

public void clearHsp()

enumerateHsp

public java.util.Enumeration enumerateHsp()

getHsp

public Hsp getHsp(int index)
           throws java.lang.IndexOutOfBoundsException

Parameters:

index -

java.lang.IndexOutOfBoundsException

getHsp

public Hsp[] getHsp()

getHspCount

public int getHspCount()

isValid

public boolean isValid()

marshal

public abstract void marshal(java.io.Writer out)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public abstract void marshal(org.xml.sax.DocumentHandler handler)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

removeHsp

public boolean removeHsp(Hsp vHsp)

Parameters:

vHsp -

setHsp

public void setHsp(int index,
                   Hsp vHsp)
            throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vHsp -

java.lang.IndexOutOfBoundsException

setHsp

public void setHsp(Hsp[] hspArray)

Parameters:

hspArray -

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException