edu.mssm.crover.tools.blast.parsers.xml.v2
Class HitType

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v2.HitType

All Implemented Interfaces:

java.io.Serializable

Direct Known Subclasses:

Hit

public abstract class HitType

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision: 1.1 $ $Date: 2003/11/19 18:34:54 $

See Also:

Serialized Form

Constructor Summary

HitType()

Method Summary

java.lang.String	getHit_Accession()
java.lang.String	getHit_Def()
Hit_Hsps	getHit_Hsps()
java.lang.String	getHit_Id()
int	getHit_Len()
int	getHit_Num()
boolean	hasHit_Len()
boolean	hasHit_Num()
boolean	isValid()
abstract void	marshal(org.xml.sax.DocumentHandler handler)
abstract void	marshal(java.io.Writer out)
void	setHit_Accession(java.lang.String hit_Accession)
void	setHit_Def(java.lang.String hit_Def)
void	setHit_Hsps(Hit_Hsps hit_Hsps)
void	setHit_Id(java.lang.String hit_Id)
void	setHit_Len(int hit_Len)
void	setHit_Num(int hit_Num)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HitType

public HitType()

Method Detail

getHit_Accession

public java.lang.String getHit_Accession()

getHit_Def

public java.lang.String getHit_Def()

getHit_Hsps

public Hit_Hsps getHit_Hsps()

getHit_Id

public java.lang.String getHit_Id()

getHit_Len

public int getHit_Len()

getHit_Num

public int getHit_Num()

hasHit_Len

public boolean hasHit_Len()

hasHit_Num

public boolean hasHit_Num()

isValid

public boolean isValid()

marshal

public abstract void marshal(java.io.Writer out)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public abstract void marshal(org.xml.sax.DocumentHandler handler)
                      throws org.exolab.castor.xml.MarshalException,
                             org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

setHit_Accession

public void setHit_Accession(java.lang.String hit_Accession)

Parameters:

hit_Accession -

setHit_Def

public void setHit_Def(java.lang.String hit_Def)

Parameters:

hit_Def -

setHit_Hsps

public void setHit_Hsps(Hit_Hsps hit_Hsps)

Parameters:

hit_Hsps -

setHit_Id

public void setHit_Id(java.lang.String hit_Id)

Parameters:

hit_Id -

setHit_Len

public void setHit_Len(int hit_Len)

Parameters:

hit_Len -

setHit_Num

public void setHit_Num(int hit_Num)

Parameters:

hit_Num -

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException