edu.mssm.crover.tools.blast.parsers.xml.v2
Class Hit

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v2.HitType
        |
        +--edu.mssm.crover.tools.blast.parsers.xml.v2.Hit
All Implemented Interfaces:
java.io.Serializable

public class Hit
extends HitType
implements java.io.Serializable

Version:
$Revision: 1.1 $ $Date: 2003/11/19 18:34:53 $
See Also:
Serialized Form

Constructor Summary
Hit()
           
 
Method Summary
 boolean isValid()
           
 void marshal(org.xml.sax.DocumentHandler handler)
           
 void marshal(java.io.Writer out)
           
static Hit unmarshal(java.io.Reader reader)
           
 void validate()
           
 
Methods inherited from class edu.mssm.crover.tools.blast.parsers.xml.v2.HitType
getHit_Accession, getHit_Def, getHit_Hsps, getHit_Id, getHit_Len, getHit_Num, hasHit_Len, hasHit_Num, setHit_Accession, setHit_Def, setHit_Hsps, setHit_Id, setHit_Len, setHit_Num
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Hit

public Hit()
Method Detail

isValid

public boolean isValid()
Overrides:
isValid in class HitType

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Specified by:
marshal in class HitType
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Specified by:
marshal in class HitType
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

unmarshal

public static Hit unmarshal(java.io.Reader reader)
                     throws org.exolab.castor.xml.MarshalException,
                            org.exolab.castor.xml.ValidationException
Parameters:
reader -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
Overrides:
validate in class HitType
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.