edu.mssm.crover.tools.blast.parsers.xml.v2
Class Hit

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v2.HitType
        |
        +--edu.mssm.crover.tools.blast.parsers.xml.v2.Hit

All Implemented Interfaces:

java.io.Serializable

public class Hit

extends HitType

implements java.io.Serializable

Version:

$Revision: 1.1 $ $Date: 2003/11/19 18:34:53 $

See Also:

Serialized Form

Constructor Summary

Hit()

Method Summary

boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
static Hit	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class edu.mssm.crover.tools.blast.parsers.xml.v2.HitType

getHit_Accession, getHit_Def, getHit_Hsps, getHit_Id, getHit_Len, getHit_Num, hasHit_Len, hasHit_Num, setHit_Accession, setHit_Def, setHit_Hsps, setHit_Id, setHit_Len, setHit_Num

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Hit

public Hit()

Method Detail

isValid

public boolean isValid()

Overrides:

isValid in class HitType

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Specified by:

marshal in class HitType

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Specified by:

marshal in class HitType

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

unmarshal

public static Hit unmarshal(java.io.Reader reader)
                     throws org.exolab.castor.xml.MarshalException,
                            org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

Overrides:

validate in class HitType

org.exolab.castor.xml.ValidationException