edu.mssm.crover.tools.blast.parsers.xml.v1
Class Hsp

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v1.Hsp
All Implemented Interfaces:
java.io.Serializable

public class Hsp
extends java.lang.Object
implements java.io.Serializable

Version:
$Revision: 1.3 $ $Date: 2002/12/09 17:46:52 $
See Also:
Serialized Form

Constructor Summary
Hsp()
           
 
Method Summary
 java.lang.String getHsp_Density()
           
 java.lang.String getHsp_Evalue()
           
 java.lang.String getHsp_Gaps()
           
 java.lang.String getHsp_HitFrame()
           
 java.lang.String getHsp_HitFrom()
           
 java.lang.String getHsp_HitTo()
           
 java.lang.String getHsp_Hseq()
           
 java.lang.String getHsp_Identity()
           
 java.lang.String getHsp_Midline()
           
 java.lang.String getHsp_Num()
           
 java.lang.String getHsp_PatternFrom()
           
 java.lang.String getHsp_PatternTo()
           
 java.lang.String getHsp_Positive()
           
 java.lang.String getHsp_Qseq()
           
 java.lang.String getHsp_QueryFrame()
           
 java.lang.String getHsp_QueryFrom()
           
 java.lang.String getHsp_QueryTo()
           
 java.lang.String getHsp_Score()
           
 boolean isValid()
           
 void marshal(org.xml.sax.DocumentHandler handler)
           
 void marshal(java.io.Writer out)
           
 void setHsp_Density(java.lang.String hsp_Density)
           
 void setHsp_Evalue(java.lang.String hsp_Evalue)
           
 void setHsp_Gaps(java.lang.String hsp_Gaps)
           
 void setHsp_HitFrame(java.lang.String hsp_HitFrame)
           
 void setHsp_HitFrom(java.lang.String hsp_HitFrom)
           
 void setHsp_HitTo(java.lang.String hsp_HitTo)
           
 void setHsp_Hseq(java.lang.String hsp_Hseq)
           
 void setHsp_Identity(java.lang.String hsp_Identity)
           
 void setHsp_Midline(java.lang.String hsp_Midline)
           
 void setHsp_Num(java.lang.String hsp_Num)
           
 void setHsp_PatternFrom(java.lang.String hsp_PatternFrom)
           
 void setHsp_PatternTo(java.lang.String hsp_PatternTo)
           
 void setHsp_Positive(java.lang.String hsp_Positive)
           
 void setHsp_Qseq(java.lang.String hsp_Qseq)
           
 void setHsp_QueryFrame(java.lang.String hsp_QueryFrame)
           
 void setHsp_QueryFrom(java.lang.String hsp_QueryFrom)
           
 void setHsp_QueryTo(java.lang.String hsp_QueryTo)
           
 void setHsp_Score(java.lang.String hsp_Score)
           
static Hsp unmarshal(java.io.Reader reader)
           
 void validate()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Hsp

public Hsp()
Method Detail

getHsp_Density

public java.lang.String getHsp_Density()

getHsp_Evalue

public java.lang.String getHsp_Evalue()

getHsp_Gaps

public java.lang.String getHsp_Gaps()

getHsp_HitFrame

public java.lang.String getHsp_HitFrame()

getHsp_HitFrom

public java.lang.String getHsp_HitFrom()

getHsp_HitTo

public java.lang.String getHsp_HitTo()

getHsp_Hseq

public java.lang.String getHsp_Hseq()

getHsp_Identity

public java.lang.String getHsp_Identity()

getHsp_Midline

public java.lang.String getHsp_Midline()

getHsp_Num

public java.lang.String getHsp_Num()

getHsp_PatternFrom

public java.lang.String getHsp_PatternFrom()

getHsp_PatternTo

public java.lang.String getHsp_PatternTo()

getHsp_Positive

public java.lang.String getHsp_Positive()

getHsp_Qseq

public java.lang.String getHsp_Qseq()

getHsp_QueryFrame

public java.lang.String getHsp_QueryFrame()

getHsp_QueryFrom

public java.lang.String getHsp_QueryFrom()

getHsp_QueryTo

public java.lang.String getHsp_QueryTo()

getHsp_Score

public java.lang.String getHsp_Score()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

setHsp_Density

public void setHsp_Density(java.lang.String hsp_Density)
Parameters:
hsp_Density -

setHsp_Evalue

public void setHsp_Evalue(java.lang.String hsp_Evalue)
Parameters:
hsp_Evalue -

setHsp_Gaps

public void setHsp_Gaps(java.lang.String hsp_Gaps)
Parameters:
hsp_Gaps -

setHsp_HitFrame

public void setHsp_HitFrame(java.lang.String hsp_HitFrame)
Parameters:
hsp_HitFrame -

setHsp_HitFrom

public void setHsp_HitFrom(java.lang.String hsp_HitFrom)
Parameters:
hsp_HitFrom -

setHsp_HitTo

public void setHsp_HitTo(java.lang.String hsp_HitTo)
Parameters:
hsp_HitTo -

setHsp_Hseq

public void setHsp_Hseq(java.lang.String hsp_Hseq)
Parameters:
hsp_Hseq -

setHsp_Identity

public void setHsp_Identity(java.lang.String hsp_Identity)
Parameters:
hsp_Identity -

setHsp_Midline

public void setHsp_Midline(java.lang.String hsp_Midline)
Parameters:
hsp_Midline -

setHsp_Num

public void setHsp_Num(java.lang.String hsp_Num)
Parameters:
hsp_Num -

setHsp_PatternFrom

public void setHsp_PatternFrom(java.lang.String hsp_PatternFrom)
Parameters:
hsp_PatternFrom -

setHsp_PatternTo

public void setHsp_PatternTo(java.lang.String hsp_PatternTo)
Parameters:
hsp_PatternTo -

setHsp_Positive

public void setHsp_Positive(java.lang.String hsp_Positive)
Parameters:
hsp_Positive -

setHsp_Qseq

public void setHsp_Qseq(java.lang.String hsp_Qseq)
Parameters:
hsp_Qseq -

setHsp_QueryFrame

public void setHsp_QueryFrame(java.lang.String hsp_QueryFrame)
Parameters:
hsp_QueryFrame -

setHsp_QueryFrom

public void setHsp_QueryFrom(java.lang.String hsp_QueryFrom)
Parameters:
hsp_QueryFrom -

setHsp_QueryTo

public void setHsp_QueryTo(java.lang.String hsp_QueryTo)
Parameters:
hsp_QueryTo -

setHsp_Score

public void setHsp_Score(java.lang.String hsp_Score)
Parameters:
hsp_Score -

unmarshal

public static Hsp unmarshal(java.io.Reader reader)
                     throws org.exolab.castor.xml.MarshalException,
                            org.exolab.castor.xml.ValidationException
Parameters:
reader -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.