edu.mssm.crover.tools.blast.parsers.xml.v1
Class Hsp

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v1.Hsp

All Implemented Interfaces:

java.io.Serializable

public class Hsp

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision: 1.3 $ $Date: 2002/12/09 17:46:52 $

See Also:

Serialized Form

Constructor Summary

Hsp()

Method Summary

java.lang.String	getHsp_Density()
java.lang.String	getHsp_Evalue()
java.lang.String	getHsp_Gaps()
java.lang.String	getHsp_HitFrame()
java.lang.String	getHsp_HitFrom()
java.lang.String	getHsp_HitTo()
java.lang.String	getHsp_Hseq()
java.lang.String	getHsp_Identity()
java.lang.String	getHsp_Midline()
java.lang.String	getHsp_Num()
java.lang.String	getHsp_PatternFrom()
java.lang.String	getHsp_PatternTo()
java.lang.String	getHsp_Positive()
java.lang.String	getHsp_Qseq()
java.lang.String	getHsp_QueryFrame()
java.lang.String	getHsp_QueryFrom()
java.lang.String	getHsp_QueryTo()
java.lang.String	getHsp_Score()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
void	setHsp_Density(java.lang.String hsp_Density)
void	setHsp_Evalue(java.lang.String hsp_Evalue)
void	setHsp_Gaps(java.lang.String hsp_Gaps)
void	setHsp_HitFrame(java.lang.String hsp_HitFrame)
void	setHsp_HitFrom(java.lang.String hsp_HitFrom)
void	setHsp_HitTo(java.lang.String hsp_HitTo)
void	setHsp_Hseq(java.lang.String hsp_Hseq)
void	setHsp_Identity(java.lang.String hsp_Identity)
void	setHsp_Midline(java.lang.String hsp_Midline)
void	setHsp_Num(java.lang.String hsp_Num)
void	setHsp_PatternFrom(java.lang.String hsp_PatternFrom)
void	setHsp_PatternTo(java.lang.String hsp_PatternTo)
void	setHsp_Positive(java.lang.String hsp_Positive)
void	setHsp_Qseq(java.lang.String hsp_Qseq)
void	setHsp_QueryFrame(java.lang.String hsp_QueryFrame)
void	setHsp_QueryFrom(java.lang.String hsp_QueryFrom)
void	setHsp_QueryTo(java.lang.String hsp_QueryTo)
void	setHsp_Score(java.lang.String hsp_Score)
static Hsp	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Hsp

public Hsp()

Method Detail

getHsp_Density

public java.lang.String getHsp_Density()

getHsp_Evalue

public java.lang.String getHsp_Evalue()

getHsp_Gaps

public java.lang.String getHsp_Gaps()

getHsp_HitFrame

public java.lang.String getHsp_HitFrame()

getHsp_HitFrom

public java.lang.String getHsp_HitFrom()

getHsp_HitTo

public java.lang.String getHsp_HitTo()

getHsp_Hseq

public java.lang.String getHsp_Hseq()

getHsp_Identity

public java.lang.String getHsp_Identity()

getHsp_Midline

public java.lang.String getHsp_Midline()

getHsp_Num

public java.lang.String getHsp_Num()

getHsp_PatternFrom

public java.lang.String getHsp_PatternFrom()

getHsp_PatternTo

public java.lang.String getHsp_PatternTo()

getHsp_Positive

public java.lang.String getHsp_Positive()

getHsp_Qseq

public java.lang.String getHsp_Qseq()

getHsp_QueryFrame

public java.lang.String getHsp_QueryFrame()

getHsp_QueryFrom

public java.lang.String getHsp_QueryFrom()

getHsp_QueryTo

public java.lang.String getHsp_QueryTo()

getHsp_Score

public java.lang.String getHsp_Score()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

setHsp_Density

public void setHsp_Density(java.lang.String hsp_Density)

Parameters:

hsp_Density -

setHsp_Evalue

public void setHsp_Evalue(java.lang.String hsp_Evalue)

Parameters:

hsp_Evalue -

setHsp_Gaps

public void setHsp_Gaps(java.lang.String hsp_Gaps)

Parameters:

hsp_Gaps -

setHsp_HitFrame

public void setHsp_HitFrame(java.lang.String hsp_HitFrame)

Parameters:

hsp_HitFrame -

setHsp_HitFrom

public void setHsp_HitFrom(java.lang.String hsp_HitFrom)

Parameters:

hsp_HitFrom -

setHsp_HitTo

public void setHsp_HitTo(java.lang.String hsp_HitTo)

Parameters:

hsp_HitTo -

setHsp_Hseq

public void setHsp_Hseq(java.lang.String hsp_Hseq)

Parameters:

hsp_Hseq -

setHsp_Identity

public void setHsp_Identity(java.lang.String hsp_Identity)

Parameters:

hsp_Identity -

setHsp_Midline

public void setHsp_Midline(java.lang.String hsp_Midline)

Parameters:

hsp_Midline -

setHsp_Num

public void setHsp_Num(java.lang.String hsp_Num)

Parameters:

hsp_Num -

setHsp_PatternFrom

public void setHsp_PatternFrom(java.lang.String hsp_PatternFrom)

Parameters:

hsp_PatternFrom -

setHsp_PatternTo

public void setHsp_PatternTo(java.lang.String hsp_PatternTo)

Parameters:

hsp_PatternTo -

setHsp_Positive

public void setHsp_Positive(java.lang.String hsp_Positive)

Parameters:

hsp_Positive -

setHsp_Qseq

public void setHsp_Qseq(java.lang.String hsp_Qseq)

Parameters:

hsp_Qseq -

setHsp_QueryFrame

public void setHsp_QueryFrame(java.lang.String hsp_QueryFrame)

Parameters:

hsp_QueryFrame -

setHsp_QueryFrom

public void setHsp_QueryFrom(java.lang.String hsp_QueryFrom)

Parameters:

hsp_QueryFrom -

setHsp_QueryTo

public void setHsp_QueryTo(java.lang.String hsp_QueryTo)

Parameters:

hsp_QueryTo -

setHsp_Score

public void setHsp_Score(java.lang.String hsp_Score)

Parameters:

hsp_Score -

unmarshal

public static Hsp unmarshal(java.io.Reader reader)
                     throws org.exolab.castor.xml.MarshalException,
                            org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException