edu.mssm.crover.tools.blast.parsers.xml.v1
Class BlastOutput_Hits

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput_Hits

All Implemented Interfaces:

java.io.Serializable

public class BlastOutput_Hits

extends java.lang.Object

implements java.io.Serializable

Version:

$Revision: 1.1 $ $Date: 2002/12/09 17:46:51 $

See Also:

Serialized Form

Constructor Summary

BlastOutput_Hits()

Method Summary

void	addHit(Hit vHit)
void	addHit(int index, Hit vHit)
void	clearHit()
java.util.Enumeration	enumerateHit()
Hit[]	getHit()
Hit	getHit(int index)
int	getHitCount()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
boolean	removeHit(Hit vHit)
void	setHit(Hit[] hitArray)
void	setHit(int index, Hit vHit)
static BlastOutput_Hits	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastOutput_Hits

public BlastOutput_Hits()

Method Detail

addHit

public void addHit(Hit vHit)
            throws java.lang.IndexOutOfBoundsException

Parameters:

vHit -

java.lang.IndexOutOfBoundsException

addHit

public void addHit(int index,
                   Hit vHit)
            throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vHit -

java.lang.IndexOutOfBoundsException

clearHit

public void clearHit()

enumerateHit

public java.util.Enumeration enumerateHit()

getHit

public Hit getHit(int index)
           throws java.lang.IndexOutOfBoundsException

Parameters:

index -

java.lang.IndexOutOfBoundsException

getHit

public Hit[] getHit()

getHitCount

public int getHitCount()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

removeHit

public boolean removeHit(Hit vHit)

Parameters:

vHit -

setHit

public void setHit(int index,
                   Hit vHit)
            throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vHit -

java.lang.IndexOutOfBoundsException

setHit

public void setHit(Hit[] hitArray)

Parameters:

hitArray -

unmarshal

public static BlastOutput_Hits unmarshal(java.io.Reader reader)
                                  throws org.exolab.castor.xml.MarshalException,
                                         org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException