edu.mssm.crover.tools.blast
Class HitSummary

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.HitSummary

public class HitSummary
extends java.lang.Object

Stores the query sequence definition (queryId), the length of the query sequence (queryLen), the definition of the hit (subjId), the long definition of the hit (defLine), the percentage similarity between the query sequence and the hit HSP (percentId, between 0 and 1, not 0 and 100), the e-value of the hit HSP (eValue), and the length of the HSP (hitLength).


Constructor Summary
HitSummary()
           
 
Method Summary
 java.lang.String getDefaultDefLine()
           
 double getDefaultEValue()
           
 int getDefaultHitLength()
           
 double getDefaultPercentId()
           
 java.lang.String getDefaultQueryId()
           
 int getDefaultQueryLen()
           
 double getDefaultScore()
           
 java.lang.String getDefaultSubjId()
           
 java.lang.String getDefLine()
           
 double getEValue()
           
 int getHitLength()
           
 double getPercentId()
           
 java.lang.String getQueryId()
           
 int getQueryLen()
           
 double getScore()
           
 java.lang.String getSubjId()
           
 void setDefLine(java.lang.String defLine)
           
 void setEValue(double eValue)
           
 void setHitLength(int hitLength)
           
 void setPercentId(double percentId)
           
 void setQueryId(java.lang.String queryId)
           
 void setQueryLen(int queryLen)
           
 void setScore(double score)
           
 void setSubjId(java.lang.String subjId)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

HitSummary

public HitSummary()
Method Detail

setQueryId

public void setQueryId(java.lang.String queryId)

getQueryId

public java.lang.String getQueryId()

getDefaultQueryId

public java.lang.String getDefaultQueryId()

setQueryLen

public void setQueryLen(int queryLen)

getQueryLen

public int getQueryLen()

getDefaultQueryLen

public int getDefaultQueryLen()

setSubjId

public void setSubjId(java.lang.String subjId)

getSubjId

public java.lang.String getSubjId()

getDefaultSubjId

public java.lang.String getDefaultSubjId()

setPercentId

public void setPercentId(double percentId)

getPercentId

public double getPercentId()

getDefaultPercentId

public double getDefaultPercentId()

setDefLine

public void setDefLine(java.lang.String defLine)

getDefLine

public java.lang.String getDefLine()

getDefaultDefLine

public java.lang.String getDefaultDefLine()

setEValue

public void setEValue(double eValue)

getEValue

public double getEValue()

getDefaultEValue

public double getDefaultEValue()

setHitLength

public void setHitLength(int hitLength)

getHitLength

public int getHitLength()

getDefaultHitLength

public int getDefaultHitLength()

setScore

public void setScore(double score)

getScore

public double getScore()

getDefaultScore

public double getDefaultScore()


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.