edu.mssm.crover.tools.blast
Class ExtractAC

java.lang.Object
  |
  +--edu.mssm.crover.tools.blast.ExtractAC

public class ExtractAC
extends java.lang.Object

Extracts the accession numbers from the definition line of a BLAST output.


Constructor Summary
ExtractAC()
           
 
Method Summary
 java.lang.String[] convert(BlastResult br)
          calls a convert() method to extract the accession numbers from the BLAST output file.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ExtractAC

public ExtractAC()
Method Detail

convert

public java.lang.String[] convert(BlastResult br)
                           throws XMLVersionNotSupportedException
calls a convert() method to extract the accession numbers from the BLAST output file. Which convert method is calls depends on the BLAST XML version number.

XMLVersionNotSupportedException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.