edu.mssm.crover.tables.treatments
Class CompositionTableTreatment

java.lang.Object
  |
  +--edu.mssm.crover.tables.treatments.TableTreatment
        |
        +--edu.mssm.crover.tables.treatments.CompositionTableTreatment

All Implemented Interfaces:

Treatment

public class CompositionTableTreatment

extends TableTreatment

Field Summary

Fields inherited from class edu.mssm.crover.tables.treatments.TableTreatment

parameter

Constructor Summary

CompositionTableTreatment(java.lang.Object param)

Method Summary

protected void	begin(Table dest)
protected void	end(Table dest)
static boolean	isBeta(Table t, Table.RowIterator i_ri, int structure_index)
static boolean	notHelical(Table t, Table.RowIterator i_ri, int structure_index)
protected void	treatInstance(Table dest, Table.RowIterator instance)

Methods inherited from class edu.mssm.crover.tables.treatments.TableTreatment

begin, end, getParameter, process, process, process, treatInstance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompositionTableTreatment

public CompositionTableTreatment(java.lang.Object param)

Method Detail

begin

protected void begin(Table dest)
              throws java.lang.Exception

Overrides:

begin in class TableTreatment

java.lang.Exception

treatInstance

protected void treatInstance(Table dest,
                             Table.RowIterator instance)
                      throws java.lang.Exception

Overrides:

treatInstance in class TableTreatment

java.lang.Exception

end

protected void end(Table dest)
            throws java.lang.Exception

Overrides:

end in class TableTreatment

java.lang.Exception

notHelical

public static boolean notHelical(Table t,
                                 Table.RowIterator i_ri,
                                 int structure_index)
                          throws InvalidColumnException,
                                 TypeMismatchException

InvalidColumnException

TypeMismatchException

isBeta

public static boolean isBeta(Table t,
                             Table.RowIterator i_ri,
                             int structure_index)
                      throws InvalidColumnException,
                             TypeMismatchException

InvalidColumnException

TypeMismatchException