edu.mssm.crover.ssedit
Class SecondaryStructureEditor

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--javax.swing.JComponent
                    |
                    +--javax.swing.JPanel
                          |
                          +--edu.mssm.crover.ssedit.SecondaryStructureEditor

All Implemented Interfaces:

javax.accessibility.Accessible, java.lang.Cloneable, java.util.EventListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable

public class SecondaryStructureEditor

extends javax.swing.JPanel

implements java.io.Serializable, java.beans.PropertyChangeListener, java.lang.Cloneable

To display and edit secondary structure elements. This editor is made up of lines of secondary structure element representations, stacked one on top of the other. Each SSR allow to adjust

the locations of the first and last residue of the associated SSE,

the type of the secondary structure element.

See Also:

Serialized Form

Field Summary

protected java.beans.PropertyChangeSupport

changes

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SecondaryStructureEditor()
Creates an editor with a private UniqueResidueModelFactory.

SecondaryStructureEditor(ResidueModelFactory factory)
Creates an editor with the provided, possibly shared, ResidueModelFactory.

Method Summary

void	addPropertyChangeListener(java.beans.PropertyChangeListener l) The specified PropertyChangeListeners propertyChange method will be called each time the value of any bound property is changed.
SecondaryStructure_Annotation	getModel()
BiologicalSequence	getSequence()
static void	main(java.lang.String[] args)
void	propertyChange(java.beans.PropertyChangeEvent e)
void	removePropertyChangeListener(java.beans.PropertyChangeListener l) Remove this PropertyChangeListener from the buttons internal list.
void	reset()
void	setModel(SecondaryStructure_Annotation model)
void	setSequence(BiologicalSequence seq)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

changes

protected java.beans.PropertyChangeSupport changes

Constructor Detail

SecondaryStructureEditor

public SecondaryStructureEditor()

Creates an editor with a private UniqueResidueModelFactory.

SecondaryStructureEditor

public SecondaryStructureEditor(ResidueModelFactory factory)

Creates an editor with the provided, possibly shared, ResidueModelFactory.

Method Detail

reset

public void reset()

setModel

public void setModel(SecondaryStructure_Annotation model)

getModel

public SecondaryStructure_Annotation getModel()

setSequence

public void setSequence(BiologicalSequence seq)

getSequence

public BiologicalSequence getSequence()

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent e)

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

main

public static void main(java.lang.String[] args)

addPropertyChangeListener

public void addPropertyChangeListener(java.beans.PropertyChangeListener l)

The specified PropertyChangeListeners propertyChange method will be called each time the value of any bound property is changed. The PropertyListener object is addded to a list of PropertyChangeListeners managed by this button, it can be removed with removePropertyChangeListener. Note: the JavaBeans specification does not require PropertyChangeListeners to run in any particular order.

Overrides:

addPropertyChangeListener in class javax.swing.JComponent

Parameters:

l - the PropertyChangeListener

See Also:

removePropertyChangeListener(java.beans.PropertyChangeListener)

removePropertyChangeListener

public void removePropertyChangeListener(java.beans.PropertyChangeListener l)

Remove this PropertyChangeListener from the buttons internal list. If the PropertyChangeListener isn't on the list, silently do nothing.

Overrides:

removePropertyChangeListener in class javax.swing.JComponent

Parameters:

l - the PropertyChangeListener

See Also:

addPropertyChangeListener(java.beans.PropertyChangeListener)