edu.mssm.crover.representation
Class SequenceOrigin_Annotation

java.lang.Object
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  +--edu.mssm.crover.representation.Annotation
        |
        +--edu.mssm.crover.representation.SequenceOrigin_Annotation

All Implemented Interfaces:

BiologicalAnnotation, RootObject, java.io.Serializable

public class SequenceOrigin_Annotation

extends Annotation

This annotation describes the origin of the sequence itself. Does this sequence comes from SwissProt, PIR, Genbank, EMBL, TrEMBL, etc.. ? This annotation is only present when a valid Origin can be constructed. This means that the accesion code and Database must be known for this annotation to be attached to an AnnotatedBioSequence.

See Also:

Serialized Form

Field Summary

Fields inherited from class edu.mssm.crover.representation.Annotation

origin

Constructor Summary

SequenceOrigin_Annotation(BiologicalOrigin so)

Method Summary

boolean	describesResidue(int position) This annotation does not describe independant residues.
java.lang.String	getInfo() Returns a consise text that describes the nature of this annotation.
BiologicalOrigin	getSequenceOrigin() Returns the origin that describes from where this sequence was obtained.
java.lang.String	toString()

Methods inherited from class edu.mssm.crover.representation.Annotation

getOrigin, setOrigin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SequenceOrigin_Annotation

public SequenceOrigin_Annotation(BiologicalOrigin so)

Method Detail

getInfo

public java.lang.String getInfo()

Description copied from interface: BiologicalAnnotation

Returns a consise text that describes the nature of this annotation. This text is constant over several instances of the same class.

Specified by:

getInfo in interface BiologicalAnnotation

Specified by:

getInfo in class Annotation

Returns:

"origin of this sequence".

getSequenceOrigin

public BiologicalOrigin getSequenceOrigin()

Returns the origin that describes from where this sequence was obtained.

toString

public java.lang.String toString()

Overrides:

toString in class Annotation

describesResidue

public boolean describesResidue(int position)

This annotation does not describe independant residues.

Returns:

False.