edu.mssm.crover.representation
Class ResidueAnnotation

java.lang.Object
  |
  +--edu.mssm.crover.representation.Annotation
        |
        +--edu.mssm.crover.representation.ResidueAnnotation

All Implemented Interfaces:

BiologicalAnnotation, RootObject, java.io.Serializable

public class ResidueAnnotation

extends Annotation

Flag residues in a sequence.

Author:

luce

See Also:

Serialized Form

Field Summary

int[]	flagged_residues
java.lang.String[]	info

Fields inherited from class edu.mssm.crover.representation.Annotation

origin

Constructor Summary

ResidueAnnotation()

Method Summary

boolean	describesResidue(int position) Returns whether the position is described by this annotation.
java.lang.String	getInfo() Returns a consise text that describes the nature of this annotation.
java.lang.String	getResInfo(int position)
void	initFlaggedResidues(int seq_length)
boolean	isResidueFlagged(int position)
void	setFlaggedResidue(int position)
void	setResidueInfo(int position, java.lang.String info)

Methods inherited from class edu.mssm.crover.representation.Annotation

getOrigin, setOrigin, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

flagged_residues

public int[] flagged_residues

info

public java.lang.String[] info

Constructor Detail

ResidueAnnotation

public ResidueAnnotation()

Method Detail

initFlaggedResidues

public void initFlaggedResidues(int seq_length)

setFlaggedResidue

public void setFlaggedResidue(int position)

setResidueInfo

public void setResidueInfo(int position,
                           java.lang.String info)

getResInfo

public java.lang.String getResInfo(int position)

isResidueFlagged

public boolean isResidueFlagged(int position)

describesResidue

public boolean describesResidue(int position)

Description copied from interface: BiologicalAnnotation

Returns whether the position is described by this annotation.

getInfo

public java.lang.String getInfo()

Description copied from interface: BiologicalAnnotation

Returns a consise text that describes the nature of this annotation. This text is constant over several instances of the same class.

Specified by:

getInfo in interface BiologicalAnnotation

Specified by:

getInfo in class Annotation