edu.mssm.crover.representation
Class Mutation_Annotation

java.lang.Object
  |
  +--edu.mssm.crover.representation.Annotation
        |
        +--edu.mssm.crover.representation.Mutation_Annotation

All Implemented Interfaces:

BiologicalAnnotation, RootObject, java.io.Serializable

public class Mutation_Annotation

extends Annotation

Annotates ponctual mutations. See the origin of the annotation for more detail about the mutation. This class only support for URL documents. There is no model of the mutation so there is no way to search for all the mutations that transformed residues to cysteine (for instance).

Author:

Fabien Campagne

See Also:

Serialized Form

Field Summary

Fields inherited from class edu.mssm.crover.representation.Annotation

origin

Constructor Summary

Mutation_Annotation()

Method Summary

boolean	describesResidue(int position) Returns whether the position is described by this annotation.
java.lang.String	getInfo() Returns a consise text that describes the nature of this annotation.
java.net.URL	getInformation() Get the URL od the document that describes this mutation.
java.lang.Integer	getResidueNumber() Get the index of the residue which is described by this mutation.
void	setInformation(java.net.URL u) Set the URL od the document that describes this mutation.
void	setResidueNumber(java.lang.Integer res) Set the index of the residue which is described by this mutation.
java.lang.String	toString()

Methods inherited from class edu.mssm.crover.representation.Annotation

getOrigin, setOrigin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Mutation_Annotation

public Mutation_Annotation()

Method Detail

getResidueNumber

public java.lang.Integer getResidueNumber()

Get the index of the residue which is described by this mutation.

setResidueNumber

public void setResidueNumber(java.lang.Integer res)

Set the index of the residue which is described by this mutation.

getInformation

public java.net.URL getInformation()

Get the URL od the document that describes this mutation.

setInformation

public void setInformation(java.net.URL u)

Set the URL od the document that describes this mutation.

getInfo

public java.lang.String getInfo()

Description copied from interface: BiologicalAnnotation

Returns a consise text that describes the nature of this annotation. This text is constant over several instances of the same class.

Specified by:

getInfo in interface BiologicalAnnotation

Specified by:

getInfo in class Annotation

Returns:

"mutation".

toString

public java.lang.String toString()

Overrides:

toString in class Annotation

describesResidue

public boolean describesResidue(int position)

Description copied from interface: BiologicalAnnotation

Returns whether the position is described by this annotation.

Returns:

True if position==getResidueNumber(), False otherwise.