edu.mssm.crover.representation
Class Disulfide_Annotation

java.lang.Object
  |
  +--edu.mssm.crover.representation.Annotation
        |
        +--edu.mssm.crover.representation.Disulfide_Annotation

All Implemented Interfaces:

BiologicalAnnotation, RootObject, java.io.Serializable

public class Disulfide_Annotation

extends Annotation

Annotates disulfide bridges.

Author:

Fabien Campagne

See Also:

Serialized Form

Field Summary

Fields inherited from class edu.mssm.crover.representation.Annotation

origin

Constructor Summary

Disulfide_Annotation(BiologicalOrigin origin, java.lang.String type_of)

Disulfide_Annotation(java.lang.String type_of)
Constructs a new Disulfide annotation.

Method Summary

boolean	describesResidue(int position) Returns whether the position is described by this annotation.
int	getFirstResidue() Get the index of the first residue of the bridge.
java.lang.String	getInfo() This annotation describes a "disulfide bridge".
int	getSecondResidue() Get the index of the second residue of the bridge.
java.lang.String	getTypeOf() Get the type of this domain, as a descriptive text.
void	setFirstResidue(int res) Set the index of the first residue of the bridge.
void	setSecondResidue(int res) Set the index of the second residue of the bridge.
java.lang.String	toString()

Methods inherited from class edu.mssm.crover.representation.Annotation

getOrigin, setOrigin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Disulfide_Annotation

public Disulfide_Annotation(java.lang.String type_of)

Constructs a new Disulfide annotation.

Disulfide_Annotation

public Disulfide_Annotation(BiologicalOrigin origin,
                            java.lang.String type_of)

Method Detail

getTypeOf

public java.lang.String getTypeOf()

Get the type of this domain, as a descriptive text.

getInfo

public java.lang.String getInfo()

This annotation describes a "disulfide bridge".

Specified by:

getInfo in interface BiologicalAnnotation

Specified by:

getInfo in class Annotation

getFirstResidue

public int getFirstResidue()

Get the index of the first residue of the bridge.

setFirstResidue

public void setFirstResidue(int res)

Set the index of the first residue of the bridge.

getSecondResidue

public int getSecondResidue()

Get the index of the second residue of the bridge.

setSecondResidue

public void setSecondResidue(int res)

Set the index of the second residue of the bridge.

toString

public java.lang.String toString()

Overrides:

toString in class Annotation

describesResidue

public boolean describesResidue(int position)

Description copied from interface: BiologicalAnnotation

Returns whether the position is described by this annotation.

Returns:

True when position is the position of the first or second residue of the bridge.