edu.mssm.crover.representation
Class Annotation

java.lang.Object
  |
  +--edu.mssm.crover.representation.Annotation

All Implemented Interfaces:

BiologicalAnnotation, RootObject, java.io.Serializable

Direct Known Subclasses:

Color_Annotation, Disulfide_Annotation, Domain_Annotation, Domain2D_Annotation, Mutation_Annotation, ResidueAnnotation, SecondaryStructure_Annotation, SequenceOrigin_Annotation, Spacer_Annotation, TmDomain_Annotation, URL_Annotation

public abstract class Annotation

extends java.lang.Object

implements BiologicalAnnotation, java.io.Serializable

Default implementation of BiologicaAnnotation.

Author:

Fabien Campagne.

See Also:

Serialized Form

Field Summary

protected BiologicalOrigin

origin

Constructor Summary

protected	Annotation()
protected	Annotation(BiologicalOrigin o)

Method Summary

abstract java.lang.String	getInfo() Returns a consise text that describes the nature of this annotation.
BiologicalOrigin	getOrigin() Returns the origin of this sequence.
void	setOrigin(BiologicalOrigin x) Sets the origin of this annotation.
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface edu.mssm.crover.representation.BiologicalAnnotation

describesResidue

Field Detail

origin

protected BiologicalOrigin origin

Constructor Detail

Annotation

protected Annotation()

Annotation

protected Annotation(BiologicalOrigin o)

Method Detail

getOrigin

public BiologicalOrigin getOrigin()

Returns the origin of this sequence.

Specified by:

getOrigin in interface BiologicalAnnotation

setOrigin

public void setOrigin(BiologicalOrigin x)

Sets the origin of this annotation. Origins are referenced, not duplicated.

Specified by:

setOrigin in interface BiologicalAnnotation

Parameters:

x - the origin that is to be referenced by this annotation.

getInfo

public abstract java.lang.String getInfo()

Description copied from interface: BiologicalAnnotation

Returns a consise text that describes the nature of this annotation. This text is constant over several instances of the same class.

Specified by:

getInfo in interface BiologicalAnnotation

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object