Package edu.mssm.crover.ims.tasks.engines

Class Summary

FailTaskEngine
FileContentTaskData	Stores the contents of a file as a byte array.
FileTaskData	Stores the name of a file.
FillTIWebTableTaskData	Stores the oragnism from which the original sequences derived from, and the taskid of a tiquery task, for use with the FillTIWebTableTaskEngine.
FillTIWebTableTaskEngine
MakeTissueListTaskData	Stores the organism for which the tissue list must be made, creates a sorted tissue list for use with the TIQueryTaskEngine.
MakeTissueListTaskEngine	This engine lists the curated tissues in the tissueinfo database associated with an organism.
MaskSequenceTaskData	Stores the taskid of a megablast task, for use with the TIMegablastTaskEngine.
MaskSequenceTaskEngine	This engine masks FASTA sequences from a file using the scylla command.
MegablastTaskData	Stores the parameters for a megablast task, for use with the MegablastTaskEngine.
MegablastTaskEngine	This engine performs a MegaBLAST operation on the FileTaskData (which contains sequence(s)).
NilEngine
RobustParallelTaskEngine
SequenceTaskData	Stores FASTA format sequences.
SleepTaskEngine
SumSometimeTaskEngine	This engine computes the sum of the values in an array of integers.
SumTaskData	Minimal example of TaskData implementation.
SumTaskEngine	This engine computes the sum of the values in an array of integers.
TestTaskEngines
TIMegablastTaskData	Stores the taskid of a megablast task, for use with the TIMegablastTaskEngine.
TIMegablastTaskEngine	This engine performs a timegablast operation on a MegaBLAST output file (in -D 3 format).
TIQueryTaskData	Stores the taskid of a timegablast task, for use with the TIQueryTaskEngine.
TIQueryTaskEngine	This engine performs a tiquery operation on a timegablast output file (tiac file).