edu.mssm.crover.ims.tasks.engines
Class MegablastTaskData

java.lang.Object
  |
  +--edu.mssm.crover.ims.tasks.engines.MegablastTaskData

All Implemented Interfaces:

java.io.Serializable, TaskData

public class MegablastTaskData

extends java.lang.Object

implements TaskData, java.io.Serializable

Stores the parameters for a megablast task, for use with the MegablastTaskEngine.

See Also:

Serialized Form

Field Summary

java.lang.String	database
double	eValue
FileTaskData	file

Constructor Summary

MegablastTaskData(FileTaskData ftd, java.lang.String db, double e)

MegablastTaskData(java.lang.String taskid, java.lang.String db, double e)

Method Summary

boolean	canMerge() Does this instance support the merge operation?
boolean	canSplit() Does this instance support the split operation?
boolean	fromTaskID()
java.lang.String	getDatabase()
double	getEValue()
FileTaskData	getFileTaskData(TaskManagerRMIServer tm)
java.lang.String	getMaskTaskID()
java.io.File	getOutFile()
FileTaskData	getSequenceFile()
TaskData	merge(java.util.Collection task_data) Returns the merging of independent task_data in one instance.
void	setOutFile(java.io.File mbr)
long	size() Returns a number proportional to the number of data represented by this instance.
java.util.Collection	split(int numpieces) Splits the data contained in this instance into several pieces.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

file

public FileTaskData file

database

public java.lang.String database

eValue

public double eValue

Constructor Detail

MegablastTaskData

public MegablastTaskData(FileTaskData ftd,
                         java.lang.String db,
                         double e)

MegablastTaskData

public MegablastTaskData(java.lang.String taskid,
                         java.lang.String db,
                         double e)

Method Detail

getMaskTaskID

public java.lang.String getMaskTaskID()

fromTaskID

public boolean fromTaskID()

canSplit

public boolean canSplit()

Description copied from interface: TaskData

Does this instance support the split operation?

Specified by:

canSplit in interface TaskData

size

public long size()

Description copied from interface: TaskData

Returns a number proportional to the number of data represented by this instance.

Specified by:

size in interface TaskData

split

public java.util.Collection split(int numpieces)

Description copied from interface: TaskData

Splits the data contained in this instance into several pieces.

Specified by:

split in interface TaskData

getSequenceFile

public FileTaskData getSequenceFile()

getDatabase

public java.lang.String getDatabase()

getEValue

public double getEValue()

canMerge

public boolean canMerge()

Description copied from interface: TaskData

Does this instance support the merge operation?

Specified by:

canMerge in interface TaskData

merge

public TaskData merge(java.util.Collection task_data)

Description copied from interface: TaskData

Returns the merging of independent task_data in one instance.

Specified by:

merge in interface TaskData

setOutFile

public void setOutFile(java.io.File mbr)

getOutFile

public java.io.File getOutFile()

getFileTaskData

public FileTaskData getFileTaskData(TaskManagerRMIServer tm)
                             throws java.io.IOException,
                                    TaskNotFoundException

java.io.IOException

TaskNotFoundException