edu.mssm.crover.imports
Class SwissProtReaderType

java.lang.Object
  |
  +--edu.mssm.crover.imports.SwissProtReaderType
All Implemented Interfaces:
ReaderType

public class SwissProtReaderType
extends java.lang.Object
implements ReaderType

Information about the SwissProtReader. The following annotations are parsed by this parser.

  • edu.mssm.crover.representation.SequenceOrigin_Annotation;
  • edu.mssm.crover.representation.SecondaryStructure_Annotation;
  • edu.mssm.crover.representation.Domain_Annotation;
  • edu.mssm.crover.representation.TM_Annotation;
  • edu.mssm.crover.representation.Disulfide_Annotation;


    Constructor Summary
    SwissProtReaderType()
               
     
    Method Summary
     boolean equals(FastaReaderType e)
               
     java.lang.String[] getExtensions()
              Returns the filename extensions the ReaderType uses to guess if it can handle an InputStream.
     java.lang.String getInfo()
              Returns detailled information about the format parsed by this ReaderType.
     java.lang.String getShortName()
              Returns the shortname of this ReaderType.
     int hashCode()
              Two ReaderType that have the same shortName are said to be equal (for the purpose of Hashtable insertion.
     boolean matchExtension(java.lang.String extension)
              This method should be in a superclass common to all the ReaderType implementations.
     
    Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, notify, notifyAll, toString, wait, wait, wait
     

    Constructor Detail

    SwissProtReaderType

    public SwissProtReaderType()
    Method Detail

    getInfo

    public java.lang.String getInfo()
    Description copied from interface: ReaderType
    Returns detailled information about the format parsed by this ReaderType.

    Specified by:
    getInfo in interface ReaderType

    getShortName

    public java.lang.String getShortName()
    Description copied from interface: ReaderType
    Returns the shortname of this ReaderType. This string is typically less than 10 characters and can be presented to the user so that he can recognize the format.

    Specified by:
    getShortName in interface ReaderType

    getExtensions

    public java.lang.String[] getExtensions()
    Description copied from interface: ReaderType
    Returns the filename extensions the ReaderType uses to guess if it can handle an InputStream.

    Specified by:
    getExtensions in interface ReaderType

    matchExtension

    public boolean matchExtension(java.lang.String extension)
    This method should be in a superclass common to all the ReaderType implementations.

    Specified by:
    matchExtension in interface ReaderType

    hashCode

    public int hashCode()
    Two ReaderType that have the same shortName are said to be equal (for the purpose of Hashtable insertion.

    Overrides:
    hashCode in class java.lang.Object

    equals

    public boolean equals(FastaReaderType e)


    Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.