edu.mssm.crover.imports
Class SwissProtReaderType

java.lang.Object
  |
  +--edu.mssm.crover.imports.SwissProtReaderType

All Implemented Interfaces:

ReaderType

public class SwissProtReaderType

extends java.lang.Object

implements ReaderType

Information about the SwissProtReader. The following annotations are parsed by this parser.

edu.mssm.crover.representation.SequenceOrigin_Annotation;

edu.mssm.crover.representation.SecondaryStructure_Annotation;

edu.mssm.crover.representation.Domain_Annotation;

edu.mssm.crover.representation.TM_Annotation;

edu.mssm.crover.representation.Disulfide_Annotation;

Constructor Summary

SwissProtReaderType()

Method Summary

boolean	equals(FastaReaderType e)
java.lang.String[]	getExtensions() Returns the filename extensions the ReaderType uses to guess if it can handle an InputStream.
java.lang.String	getInfo() Returns detailled information about the format parsed by this ReaderType.
java.lang.String	getShortName() Returns the shortname of this ReaderType.
int	hashCode() Two ReaderType that have the same shortName are said to be equal (for the purpose of Hashtable insertion.
boolean	matchExtension(java.lang.String extension) This method should be in a superclass common to all the ReaderType implementations.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SwissProtReaderType

public SwissProtReaderType()

Method Detail

getInfo

public java.lang.String getInfo()

Description copied from interface: ReaderType

Returns detailled information about the format parsed by this ReaderType.

Specified by:

getInfo in interface ReaderType

getShortName

public java.lang.String getShortName()

Description copied from interface: ReaderType

Returns the shortname of this ReaderType. This string is typically less than 10 characters and can be presented to the user so that he can recognize the format.

Specified by:

getShortName in interface ReaderType

getExtensions

public java.lang.String[] getExtensions()

Description copied from interface: ReaderType

Returns the filename extensions the ReaderType uses to guess if it can handle an InputStream.

Specified by:

getExtensions in interface ReaderType

matchExtension

public boolean matchExtension(java.lang.String extension)

This method should be in a superclass common to all the ReaderType implementations.

Specified by:

matchExtension in interface ReaderType

hashCode

public int hashCode()

Two ReaderType that have the same shortName are said to be equal (for the purpose of Hashtable insertion.

Overrides:

hashCode in class java.lang.Object

equals

public boolean equals(FastaReaderType e)