edu.mssm.crover.domain2d.rbdg.xml
Class Subunit

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.rbdg.xml.Subunit

All Implemented Interfaces:

java.io.Serializable

public class Subunit

extends java.lang.Object

implements java.io.Serializable

Each subunit is located on the page according to the location and spacer of the subunit that preceeds it. The location of the first subunit is determined so that the complete diagram is visible. At the time of writing, the following types of subunits are available (all types should be entered starting with edu.mssm.crover.domain2d): FreeLoop, ExtremityDomain (for N-terms), CtermDomain, HelicalDomain, BetaStrandDomain, ProteinSegmentDomain

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Subunit()

Method Summary

ControlPoints	getControlPoints()
Direction	getDirection()
java.lang.String	getId()
Spacer	getSpacer()
java.lang.String	getType()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
void	setControlPoints(ControlPoints controlPoints)
void	setDirection(Direction direction)
void	setId(java.lang.String id)
void	setSpacer(Spacer spacer)
void	setType(java.lang.String type)
static Subunit	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Subunit

public Subunit()

Method Detail

getControlPoints

public ControlPoints getControlPoints()

getDirection

public Direction getDirection()

getId

public java.lang.String getId()

getSpacer

public Spacer getSpacer()

getType

public java.lang.String getType()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

setControlPoints

public void setControlPoints(ControlPoints controlPoints)

Parameters:

controlPoints -

setDirection

public void setDirection(Direction direction)

Parameters:

direction -

setId

public void setId(java.lang.String id)

Parameters:

id -

setSpacer

public void setSpacer(Spacer spacer)

Parameters:

spacer -

setType

public void setType(java.lang.String type)

Parameters:

type -

unmarshal

public static Subunit unmarshal(java.io.Reader reader)
                         throws org.exolab.castor.xml.MarshalException,
                                org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException