edu.mssm.crover.domain2d.rbdg.xml
Class Segment

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.rbdg.xml.Segment

All Implemented Interfaces:

java.io.Serializable

public class Segment

extends java.lang.Object

implements java.io.Serializable

Defines the limits of of segment of secondary structure. Segments should span non overlapping parts of the sequence.

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Segment()

Method Summary

int	getEnd()
java.lang.String	getMapto()
int	getStart()
boolean	hasEnd()
boolean	hasStart()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
void	setEnd(int end)
void	setMapto(java.lang.String mapto)
void	setStart(int start)
static Segment	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Segment

public Segment()

Method Detail

getEnd

public int getEnd()

getMapto

public java.lang.String getMapto()

getStart

public int getStart()

hasEnd

public boolean hasEnd()

hasStart

public boolean hasStart()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

setEnd

public void setEnd(int end)

Parameters:

end -

setMapto

public void setMapto(java.lang.String mapto)

Parameters:

mapto -

setStart

public void setStart(int start)

Parameters:

start -

unmarshal

public static Segment unmarshal(java.io.Reader reader)
                         throws org.exolab.castor.xml.MarshalException,
                                org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException