edu.mssm.crover.domain2d.rbdg.xml
Class Segment

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.rbdg.xml.Segment
All Implemented Interfaces:
java.io.Serializable

public class Segment
extends java.lang.Object
implements java.io.Serializable

Defines the limits of of segment of secondary structure. Segments should span non overlapping parts of the sequence.

Version:
$Revision$ $Date$
See Also:
Serialized Form

Constructor Summary
Segment()
           
 
Method Summary
 int getEnd()
           
 java.lang.String getMapto()
           
 int getStart()
           
 boolean hasEnd()
           
 boolean hasStart()
           
 boolean isValid()
           
 void marshal(org.xml.sax.DocumentHandler handler)
           
 void marshal(java.io.Writer out)
           
 void setEnd(int end)
           
 void setMapto(java.lang.String mapto)
           
 void setStart(int start)
           
static Segment unmarshal(java.io.Reader reader)
           
 void validate()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Segment

public Segment()
Method Detail

getEnd

public int getEnd()

getMapto

public java.lang.String getMapto()

getStart

public int getStart()

hasEnd

public boolean hasEnd()

hasStart

public boolean hasStart()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Parameters:
out -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException
Parameters:
handler -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

setEnd

public void setEnd(int end)
Parameters:
end -

setMapto

public void setMapto(java.lang.String mapto)
Parameters:
mapto -

setStart

public void setStart(int start)
Parameters:
start -

unmarshal

public static Segment unmarshal(java.io.Reader reader)
                         throws org.exolab.castor.xml.MarshalException,
                                org.exolab.castor.xml.ValidationException
Parameters:
reader -
org.exolab.castor.xml.MarshalException
org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException
org.exolab.castor.xml.ValidationException


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.