edu.mssm.crover.domain2d.rbdg.xml
Class Protein

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.rbdg.xml.Protein

All Implemented Interfaces:

java.io.Serializable

public class Protein

extends java.lang.Object

implements java.io.Serializable

Describes the protein to be rendered.

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Protein()

Method Summary

java.lang.String	getName()
java.lang.String	getResidueCodes()
SecondaryStructure	getSecondaryStructure()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
void	setName(java.lang.String name)
void	setResidueCodes(java.lang.String residueCodes)
void	setSecondaryStructure(SecondaryStructure secondaryStructure)
static Protein	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Protein

public Protein()

Method Detail

getName

public java.lang.String getName()

getResidueCodes

public java.lang.String getResidueCodes()

getSecondaryStructure

public SecondaryStructure getSecondaryStructure()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

setName

public void setName(java.lang.String name)

Parameters:

name -

setResidueCodes

public void setResidueCodes(java.lang.String residueCodes)

Parameters:

residueCodes -

setSecondaryStructure

public void setSecondaryStructure(SecondaryStructure secondaryStructure)

Parameters:

secondaryStructure -

unmarshal

public static Protein unmarshal(java.io.Reader reader)
                         throws org.exolab.castor.xml.MarshalException,
                                org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException