edu.mssm.crover.domain2d.rbdg.xml
Class Links

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.rbdg.xml.Links

All Implemented Interfaces:

java.io.Serializable

public class Links

extends java.lang.Object

implements java.io.Serializable

Describes hyperlinks attached to various components of the diagram.

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Links()

Method Summary

void	addResidue(int index, Residue vResidue)
void	addResidue(Residue vResidue)
void	addSubunitRef(int index, SubunitRef vSubunitRef)
void	addSubunitRef(SubunitRef vSubunitRef)
void	clearResidue()
void	clearSubunitRef()
java.util.Enumeration	enumerateResidue()
java.util.Enumeration	enumerateSubunitRef()
Residue[]	getResidue()
Residue	getResidue(int index)
int	getResidueCount()
SubunitRef[]	getSubunitRef()
SubunitRef	getSubunitRef(int index)
int	getSubunitRefCount()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
boolean	removeResidue(Residue vResidue)
boolean	removeSubunitRef(SubunitRef vSubunitRef)
void	setResidue(int index, Residue vResidue)
void	setResidue(Residue[] residueArray)
void	setSubunitRef(int index, SubunitRef vSubunitRef)
void	setSubunitRef(SubunitRef[] subunitRefArray)
static Links	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Links

public Links()

Method Detail

addResidue

public void addResidue(Residue vResidue)
                throws java.lang.IndexOutOfBoundsException

Parameters:

vResidue -

java.lang.IndexOutOfBoundsException

addResidue

public void addResidue(int index,
                       Residue vResidue)
                throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vResidue -

java.lang.IndexOutOfBoundsException

addSubunitRef

public void addSubunitRef(SubunitRef vSubunitRef)
                   throws java.lang.IndexOutOfBoundsException

Parameters:

vSubunitRef -

java.lang.IndexOutOfBoundsException

addSubunitRef

public void addSubunitRef(int index,
                          SubunitRef vSubunitRef)
                   throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vSubunitRef -

java.lang.IndexOutOfBoundsException

clearResidue

public void clearResidue()

clearSubunitRef

public void clearSubunitRef()

enumerateResidue

public java.util.Enumeration enumerateResidue()

enumerateSubunitRef

public java.util.Enumeration enumerateSubunitRef()

getResidue

public Residue getResidue(int index)
                   throws java.lang.IndexOutOfBoundsException

Parameters:

index -

java.lang.IndexOutOfBoundsException

getResidue

public Residue[] getResidue()

getResidueCount

public int getResidueCount()

getSubunitRef

public SubunitRef getSubunitRef(int index)
                         throws java.lang.IndexOutOfBoundsException

Parameters:

index -

java.lang.IndexOutOfBoundsException

getSubunitRef

public SubunitRef[] getSubunitRef()

getSubunitRefCount

public int getSubunitRefCount()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

removeResidue

public boolean removeResidue(Residue vResidue)

Parameters:

vResidue -

removeSubunitRef

public boolean removeSubunitRef(SubunitRef vSubunitRef)

Parameters:

vSubunitRef -

setResidue

public void setResidue(int index,
                       Residue vResidue)
                throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vResidue -

java.lang.IndexOutOfBoundsException

setResidue

public void setResidue(Residue[] residueArray)

Parameters:

residueArray -

setSubunitRef

public void setSubunitRef(int index,
                          SubunitRef vSubunitRef)
                   throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vSubunitRef -

java.lang.IndexOutOfBoundsException

setSubunitRef

public void setSubunitRef(SubunitRef[] subunitRefArray)

Parameters:

subunitRefArray -

unmarshal

public static Links unmarshal(java.io.Reader reader)
                       throws org.exolab.castor.xml.MarshalException,
                              org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException