edu.mssm.crover.domain2d.rbdg.xml
Class DiagramLayout

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.rbdg.xml.DiagramLayout

All Implemented Interfaces:

java.io.Serializable

public class DiagramLayout

extends java.lang.Object

implements java.io.Serializable

Describes the graphical arrangement of secondary structure units on the 2D page.

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

DiagramLayout()

Method Summary

void	addSubunit(int index, Subunit vSubunit)
void	addSubunit(Subunit vSubunit)
void	clearSubunit()
java.util.Enumeration	enumerateSubunit()
Subunit[]	getSubunit()
Subunit	getSubunit(int index)
int	getSubunitCount()
TmBundle	getTmBundle()
boolean	isValid()
void	marshal(org.xml.sax.DocumentHandler handler)
void	marshal(java.io.Writer out)
boolean	removeSubunit(Subunit vSubunit)
void	setSubunit(int index, Subunit vSubunit)
void	setSubunit(Subunit[] subunitArray)
void	setTmBundle(TmBundle tmBundle)
static DiagramLayout	unmarshal(java.io.Reader reader)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DiagramLayout

public DiagramLayout()

Method Detail

addSubunit

public void addSubunit(Subunit vSubunit)
                throws java.lang.IndexOutOfBoundsException

Parameters:

vSubunit -

java.lang.IndexOutOfBoundsException

addSubunit

public void addSubunit(int index,
                       Subunit vSubunit)
                throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vSubunit -

java.lang.IndexOutOfBoundsException

clearSubunit

public void clearSubunit()

enumerateSubunit

public java.util.Enumeration enumerateSubunit()

getSubunit

public Subunit getSubunit(int index)
                   throws java.lang.IndexOutOfBoundsException

Parameters:

index -

java.lang.IndexOutOfBoundsException

getSubunit

public Subunit[] getSubunit()

getSubunitCount

public int getSubunitCount()

getTmBundle

public TmBundle getTmBundle()

isValid

public boolean isValid()

marshal

public void marshal(java.io.Writer out)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

out -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

marshal

public void marshal(org.xml.sax.DocumentHandler handler)
             throws org.exolab.castor.xml.MarshalException,
                    org.exolab.castor.xml.ValidationException

Parameters:

handler -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

removeSubunit

public boolean removeSubunit(Subunit vSubunit)

Parameters:

vSubunit -

setSubunit

public void setSubunit(int index,
                       Subunit vSubunit)
                throws java.lang.IndexOutOfBoundsException

Parameters:

index -

vSubunit -

java.lang.IndexOutOfBoundsException

setSubunit

public void setSubunit(Subunit[] subunitArray)

Parameters:

subunitArray -

setTmBundle

public void setTmBundle(TmBundle tmBundle)

Parameters:

tmBundle -

unmarshal

public static DiagramLayout unmarshal(java.io.Reader reader)
                               throws org.exolab.castor.xml.MarshalException,
                                      org.exolab.castor.xml.ValidationException

Parameters:

reader -

org.exolab.castor.xml.MarshalException

org.exolab.castor.xml.ValidationException

validate

public void validate()
              throws org.exolab.castor.xml.ValidationException

org.exolab.castor.xml.ValidationException