Hierarchy For Package edu.mssm.crover.domain2d

Package Hierarchies:

All Packages

Class Hierarchy

• class java.lang.Object
  • class edu.mssm.crover.domain2d.AbstractAnnotationsToDrawings (implements edu.mssm.crover.domain2d.AnnotationsToDrawings)
    • class edu.mssm.crover.domain2d.DiagramAnnotationsToDrawingsImpl
  • class edu.mssm.crover.domain2d.AbstractLoopTemplate (implements edu.mssm.crover.domain2d.LoopTemplate)
    • class edu.mssm.crover.domain2d.AlgorithmicLoopTemplate (implements edu.mssm.crover.domain2d.LoopTemplate)
    • class edu.mssm.crover.domain2d.MultiPointLoopTemplate (implements edu.mssm.crover.domain2d.LoopTemplate)
  • class edu.mssm.crover.representation.Annotation (implements edu.mssm.crover.representation.BiologicalAnnotation, java.io.Serializable)
    • class edu.mssm.crover.domain2d.Domain2D_Annotation (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.BasicResidueGlyphRenderingAttributes (implements edu.mssm.crover.domain2d.ResidueGlyphRenderingAttributes)
  • class edu.mssm.crover.domain2d.BezierPath (implements java.lang.Cloneable)
  • class edu.mssm.crover.domain2d.BrushingModel (implements edu.mssm.crover.domain2d.BrushingModelInterface)
  • class edu.mssm.crover.domain2d.ColorAnnotationsColorScheme (implements edu.mssm.crover.domain2d.ResidueColorScheme, java.io.Serializable)
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Container
      • class javax.swing.JComponent (implements java.io.Serializable)
        • class javax.swing.JPanel (implements javax.accessibility.Accessible)
          • class edu.mssm.crover.domain2d.JPanelImage
          • class edu.mssm.crover.domain2d.PrintablePanel (implements edu.mssm.crover.domain2d.CoolPrint)
            • class edu.mssm.crover.domain2d.DrawingSurface (implements edu.mssm.crover.domain2d.CoolPrintRescale, java.util.Observer, java.awt.print.Printable)
            • class edu.mssm.crover.domain2d.ResidueGlyph (implements edu.mssm.crover.domain2d.Drawing, java.util.Observer)
              • class edu.mssm.crover.domain2d.EllipsisGlyph
            • class edu.mssm.crover.domain2d.ResidueNumberingDrawings (implements edu.mssm.crover.domain2d.Drawing)
            • class edu.mssm.crover.domain2d.TwoEndsDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
              • class edu.mssm.crover.domain2d.TwoEndsDraggableDomain
                • class edu.mssm.crover.domain2d.BetaStrandDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
                • class edu.mssm.crover.domain2d.FreeLoop (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
                  • class edu.mssm.crover.domain2d.ExtremityDomain (implements edu.mssm.crover.domain2d.Domain2D)
                    • class edu.mssm.crover.domain2d.CtermDomain
                • class edu.mssm.crover.domain2d.HelicalDomain
                • class edu.mssm.crover.domain2d.InvalidDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
                • class edu.mssm.crover.domain2d.ProteinSegmentDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
          • class edu.mssm.crover.domain2d.TwoResidueLineDrawing (implements edu.mssm.crover.domain2d.Drawing)
            • class edu.mssm.crover.domain2d.DisulfidBridgeDrawing
  • class edu.mssm.crover.domain2d.Diagram
  • class edu.mssm.crover.domain2d.DisulfidBridgeTranslator (implements edu.mssm.crover.domain2d.AnnotationParser)
  • class edu.mssm.crover.domain2d.Domain2D_ABuilder
  • class edu.mssm.crover.domain2d.DraggingModel (implements edu.mssm.crover.domain2d.DraggingModelInterface)
  • class edu.mssm.crover.domain2d.DSLayoutManager (implements java.awt.LayoutManager, java.io.Serializable)
  • class edu.mssm.crover.domain2d.DummySolver (implements edu.mssm.crover.domain2d.Solver)
  • class edu.mssm.crover.domain2d.GlyphLinkImpl (implements edu.mssm.crover.domain2d.GlyphLink)
  • class edu.mssm.crover.domain2d.GPCRDB_ColorScheme (implements edu.mssm.crover.domain2d.ResidueColorScheme, java.io.Serializable)
  • class edu.mssm.crover.domain2d.HelixLayout (implements java.awt.LayoutManager, java.io.Serializable)
  • class edu.mssm.crover.domain2d.LayoutController
  • class edu.mssm.crover.domain2d.LayoutParser
  • class edu.mssm.crover.domain2d.LoopTemplateSelectorImpl (implements edu.mssm.crover.domain2d.LoopTemplateSelector)
  • class edu.mssm.crover.domain2d.MemLeakTestDiagram
  • class edu.mssm.crover.domain2d.MonotonousColorScheme (implements edu.mssm.crover.domain2d.ResidueColorScheme, java.io.Serializable)
  • class java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • class edu.mssm.crover.domain2d.BrushingMouseListener (implements java.awt.event.MouseMotionListener)
  • class edu.mssm.crover.domain2d.NBezierPath (implements java.lang.Cloneable)
  • class java.util.Observable
    • class edu.mssm.crover.domain2d.DBSModel (implements edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
      • class edu.mssm.crover.domain2d.BetaStrandModel
      • class edu.mssm.crover.domain2d.DefaultHelixModel (implements edu.mssm.crover.domain2d.HelixModel)
      • class edu.mssm.crover.domain2d.FreeLoopModel
        • class edu.mssm.crover.domain2d.ExtremityModel
      • class edu.mssm.crover.domain2d.ProteinSegmentModel
    • class edu.mssm.crover.domain2d.Domain2D_Annotation.LayoutInfo (implements java.io.Serializable)
    • class edu.mssm.crover.domain2d.Domain2D_Annotation.RenderingInfo (implements java.io.Serializable)
    • class edu.mssm.crover.domain2d.ReflexPoint (implements edu.mssm.crover.domain2d.ConstrainedPoint)
    • class edu.mssm.crover.domain2d.ResidueModel (implements edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, java.lang.Cloneable, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
    • class edu.mssm.crover.domain2d.UIStates
  • class edu.mssm.crover.domain2d.ProteinSegmentLinkImpl (implements edu.mssm.crover.domain2d.GlyphLink)
  • class edu.mssm.crover.domain2d.ResidueGlyphFactoryImpl (implements edu.mssm.crover.domain2d.ResidueGlyphFactory)
  • class edu.mssm.crover.domain2d.RExpression
    • class edu.mssm.crover.domain2d.RAdd
    • class edu.mssm.crover.domain2d.RConstAdaptor
    • class edu.mssm.crover.domain2d.RConstant
    • class edu.mssm.crover.domain2d.REqual
    • class edu.mssm.crover.domain2d.RGE
    • class edu.mssm.crover.domain2d.RSub
    • class edu.mssm.crover.domain2d.RVariable
  • class edu.mssm.crover.domain2d.Rotator
  • class edu.mssm.crover.domain2d.SelectedModel (implements edu.mssm.crover.domain2d.SelectedModelInterface)
  • class edu.mssm.crover.domain2d.SelectionToVisualization (implements java.util.Observer)
  • class edu.mssm.crover.domain2d.SharedResidueModelFactory (implements edu.mssm.crover.domain2d.ResidueModelFactory)
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Error
      • class edu.mssm.crover.domain2d.LayoutController.LayoutAlreadySelected
    • class java.lang.Exception
      • class edu.mssm.crover.domain2d.Domain2D_ABuilder.UnsupportedSubunitType
      • class edu.mssm.crover.domain2d.Domain2D_Annotation.BadDomain2DRenderingClass
      • class edu.mssm.crover.domain2d.Domain2D_Annotation.BadLoopTemplateClass
      • class edu.mssm.crover.domain2d.InvalidRange
      • class edu.mssm.crover.domain2d.InvalidState
      • class edu.mssm.crover.domain2d.RInvalidChange
      • class edu.mssm.crover.domain2d.SolverInternalError
  • class edu.mssm.crover.domain2d.UniqueResidueModelFactory (implements edu.mssm.crover.domain2d.ResidueGlyphRenderingAttributes, edu.mssm.crover.domain2d.ResidueModelFactory)

Interface Hierarchy

• interface edu.mssm.crover.domain2d.AbstractModel
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
• interface edu.mssm.crover.domain2d.AnnotationParser
• interface edu.mssm.crover.domain2d.AnnotationsToDrawings
• interface edu.mssm.crover.domain2d.BrushingModelInterface
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
• interface edu.mssm.crover.domain2d.ConstrainedPoint
• interface edu.mssm.crover.domain2d.CoolPrint
• interface edu.mssm.crover.domain2d.CoolPrintRescale
• interface edu.mssm.crover.domain2d.DraggingModelInterface
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
• interface edu.mssm.crover.domain2d.Drawing
  • interface edu.mssm.crover.domain2d.Domain2D
• interface edu.mssm.crover.domain2d.GlyphLink
• interface edu.mssm.crover.domain2d.LoopTemplate
• interface edu.mssm.crover.domain2d.LoopTemplateSelector
• interface edu.mssm.crover.domain2d.ResidueColorScheme
• interface edu.mssm.crover.domain2d.ResidueGlyphFactory
• interface edu.mssm.crover.domain2d.ResidueGlyphRenderingAttributes
  • interface edu.mssm.crover.domain2d.ResidueModelFactory
• interface edu.mssm.crover.domain2d.SelectedModelInterface
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.DraggingModelInterface)
• interface edu.mssm.crover.domain2d.Solver