edu.mssm.crover.domain2d
Class ResidueGlyph

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--javax.swing.JComponent
                    |
                    +--javax.swing.JPanel
                          |
                          +--edu.mssm.crover.domain2d.PrintablePanel
                                |
                                +--edu.mssm.crover.domain2d.ResidueGlyph

All Implemented Interfaces:

javax.accessibility.Accessible, CoolPrint, Drawing, java.awt.image.ImageObserver, java.awt.MenuContainer, java.util.Observer, java.io.Serializable

Direct Known Subclasses:

EllipsisGlyph

public class ResidueGlyph

extends PrintablePanel

implements java.util.Observer, Drawing

A ResidueGlyph is the visual representation of a residue. Each instance represents a ResidueModel.

See Also:

Serialized Form

Field Summary

protected int	border
static int	CIRCLE_SHAPE Circular shape.
protected boolean	numbering
static int	OCTAGONAL_SHAPE Octagonal shape.
protected ConstrainedPoint	position
static int	RECT_SHAPE rectangular shape.
protected java.awt.Stroke	singleLineStroke

Fields inherited from class edu.mssm.crover.domain2d.PrintablePanel

SVG_ANCHOR_HREF_PROPERTY

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

ResidueGlyph(ResidueModel sharedResidueModel)
Builds a glyph with a border.

ResidueGlyph(ResidueModel sharedResidueModel, int border)
Builds a glyph from a model.

Method Summary

boolean	contains(int x, int y) Redefines the clickable limit of the glyph component.
void	dispose() Dispose of this drawing.
protected void	finalize()
ConstrainedPoint	firstResiduePos()
java.awt.Component	getComponent() Returns the component associated with this drawing.
ResidueModel	getModel() Returns the model this glyph represents.
java.awt.geom.Rectangle2D	getRenderingBox() Returns the box in which the glyph rendering is being done.
boolean	getSelectionState() Gets the selection state.
DrawingSurface	getSurface() Returns null.
ConstrainedPoint	lastResiduePos()
void	paintComponent(java.awt.Graphics g)
ConstrainedPoint	position() Returns the position of this drawing, inside its direct container.
void	setDefaults(ResidueGlyphRenderingAttributes attributes) Reads and initialize the rendering attributes from the default attributes.
void	setDrawNumbering(boolean show)
void	setLocation(int x, int y)
void	setLocation(java.awt.Point p)
void	setModel(ResidueModel new_model) Sets the model this glyph represents.
void	setOutline(boolean outline) Select the outline drawing mode.
void	setSelected(boolean state) Sets the selection state.
void	suggestLocation(int x, int y) Suggest a new location for this drawing, inside its container.
void	suggestLocation(java.awt.Point p) Suggest a new location for this drawing, inside its container.
void	update(java.awt.Graphics g)
void	update(java.util.Observable o, java.lang.Object arg)

Methods inherited from class edu.mssm.crover.domain2d.PrintablePanel

coolPrint, recurseSVGPrint, svgPrint

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface edu.mssm.crover.domain2d.Drawing

getParent

Field Detail

border

protected int border

singleLineStroke

protected java.awt.Stroke singleLineStroke

CIRCLE_SHAPE

public static final int CIRCLE_SHAPE

Circular shape.

See Also:

Constant Field Values

RECT_SHAPE

public static final int RECT_SHAPE

rectangular shape.

See Also:

Constant Field Values

OCTAGONAL_SHAPE

public static final int OCTAGONAL_SHAPE

Octagonal shape. Not implemented.

See Also:

Constant Field Values

position

protected ConstrainedPoint position

numbering

protected boolean numbering

Constructor Detail

ResidueGlyph

public ResidueGlyph(ResidueModel sharedResidueModel)

Builds a glyph with a border. The border is the total component dimension from which is removed the glyph rendering (x0,y0) to (wg,hg).

ResidueGlyph

public ResidueGlyph(ResidueModel sharedResidueModel,
                    int border)

Builds a glyph from a model.

Method Detail

setDefaults

public void setDefaults(ResidueGlyphRenderingAttributes attributes)

Reads and initialize the rendering attributes from the default attributes.

getComponent

public java.awt.Component getComponent()

Description copied from interface: Drawing

Returns the component associated with this drawing.

Specified by:

getComponent in interface Drawing

setSelected

public void setSelected(boolean state)

Sets the selection state.

getSelectionState

public boolean getSelectionState()

Gets the selection state.

Returns:

true When the glyph is selected, false otherwise.

getModel

public ResidueModel getModel()

Returns the model this glyph represents.

setOutline

public void setOutline(boolean outline)

Select the outline drawing mode. The drawing shapes can be filled or simply outlined.

Parameters:

outline - True when outline mode is desired, false for filled shapes.

dispose

public void dispose()

Description copied from interface: Drawing

Dispose of this drawing. Frees all the ressources associated with the drawing, notify any observable the drawing registered with that it can be removed from the observer list.

Specified by:

dispose in interface Drawing

setModel

public void setModel(ResidueModel new_model)

Sets the model this glyph represents.

update

public void update(java.util.Observable o,
                   java.lang.Object arg)

Specified by:

update in interface java.util.Observer

update

public void update(java.awt.Graphics g)

Overrides:

update in class javax.swing.JComponent

paintComponent

public void paintComponent(java.awt.Graphics g)

Overrides:

paintComponent in class javax.swing.JComponent

setLocation

public void setLocation(int x,
                        int y)

Overrides:

setLocation in class java.awt.Component

setLocation

public void setLocation(java.awt.Point p)

Overrides:

setLocation in class java.awt.Component

position

public ConstrainedPoint position()

Description copied from interface: Drawing

Returns the position of this drawing, inside its direct container.

Specified by:

position in interface Drawing

firstResiduePos

public ConstrainedPoint firstResiduePos()

lastResiduePos

public ConstrainedPoint lastResiduePos()

getSurface

public DrawingSurface getSurface()

Returns null. getSurface is used by he BrushingMouseListener to force a repaint of the DrawingSurface when the dragging just finished. Dragging a ResidueGlyph does not require to repaint the whole surface in these circumstances, but exception (last residue of a loop or domain which spacer depends on this position). For these exceptions, inherit from this class and override getSurface to return the domain's getSurface result.

Specified by:

getSurface in interface Drawing

See Also:

for details .

suggestLocation

public void suggestLocation(java.awt.Point p)

Description copied from interface: Drawing

Suggest a new location for this drawing, inside its container.

Specified by:

suggestLocation in interface Drawing

suggestLocation

public void suggestLocation(int x,
                            int y)

Description copied from interface: Drawing

Suggest a new location for this drawing, inside its container.

Specified by:

suggestLocation in interface Drawing

finalize

protected void finalize()
                 throws java.lang.Throwable

Overrides:

finalize in class java.lang.Object

java.lang.Throwable

setDrawNumbering

public void setDrawNumbering(boolean show)

getRenderingBox

public java.awt.geom.Rectangle2D getRenderingBox()

Returns the box in which the glyph rendering is being done. This box excludes the border of the residue glyph. This duplicates ResidueGlyphFactory.getRenderingBox() and should return the same rectangle when all the glyphs are the same size.

contains

public boolean contains(int x,
                        int y)

Redefines the clickable limit of the glyph component. The new limit matches the rendering box of this residue glyph.

Overrides:

contains in class javax.swing.JComponent

Returns:

True when the point (x,y) lies inside the rendering box, False otherwise.