edu.mssm.crover.domain2d
Interface HelixModel

All Superinterfaces:

edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface

All Known Implementing Classes:

DefaultHelixModel

public interface HelixModel

extends edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.AbstractModel

Helix model. Model represented by a HelicalDomain.

See Also:

HelicalDomain

Field Summary

static int	LEFT_HANDED A left-handed helix.
static int	RIGHT_HANDED A right-handed helix.

Method Summary

void	addObserver(java.util.Observer o)
java.awt.geom.Point2D	getDirection() Gets the direction of the drawing.
int	getHelixType() Gets the type of this helix.
int[]	getPeriodicity() Gets the periodicity of the helix.
boolean	isBrushing()
boolean	isDraggable()
boolean	isSelected()
void	setBrushing(boolean new_state)
void	setDirection(java.awt.geom.Point2D extremity) Sets the direction of the drawing: extremity is the end of a vector starting at (0,0).
void	setDragging(boolean new_state)
void	setHelixType(int type) Sets the type of this helix.
void	setPeriodicity(int[] new_per) Sets the periodicity of the helix.
void	setSelected(boolean new_state)
void	toggleSelected()

Field Detail

LEFT_HANDED

public static final int LEFT_HANDED

A left-handed helix.

See Also:

Constant Field Values

RIGHT_HANDED

public static final int RIGHT_HANDED

A right-handed helix.

See Also:

Constant Field Values

Method Detail

setPeriodicity

public void setPeriodicity(int[] new_per)

Sets the periodicity of the helix. The array of integers encodes the periodicity of the helix. Each integer give the number of residue to display for each turn of a helix. When the array ends, new values are taken from the start, in a cycle. Example: {3,4} makes helices with alternatively 3 or 4 residues per diagonal line. {2,2} would represent a kind of beta-strand with a helix representation.

getPeriodicity

public int[] getPeriodicity()

Gets the periodicity of the helix.

See Also:

setPeriodicity(int[])

setHelixType

public void setHelixType(int type)

Sets the type of this helix. A helix can be left-handed or right-handed.

See Also:

LEFT_HANDED, RIGHT_HANDED

getHelixType

public int getHelixType()

Gets the type of this helix.

setDirection

public void setDirection(java.awt.geom.Point2D extremity)

Sets the direction of the drawing: extremity is the end of a vector starting at (0,0). The vector point in the direction in which the helix is rendered.

getDirection

public java.awt.geom.Point2D getDirection()

Gets the direction of the drawing.

isDraggable

public boolean isDraggable()

setDragging

public void setDragging(boolean new_state)

isSelected

public boolean isSelected()

setSelected

public void setSelected(boolean new_state)

toggleSelected

public void toggleSelected()

isBrushing

public boolean isBrushing()

setBrushing

public void setBrushing(boolean new_state)

addObserver

public void addObserver(java.util.Observer o)