edu.mssm.crover.domain2d
Class GPCRDB_ColorScheme

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.GPCRDB_ColorScheme

All Implemented Interfaces:

ResidueColorScheme, java.io.Serializable

public class GPCRDB_ColorScheme

extends java.lang.Object

implements ResidueColorScheme, java.io.Serializable

The ColorScheme used by GPCRDB. The color definitions where obtained from the colorscheme used by Viseur when rendering the GPCRDB snakes. see http://www.gpcr.org/7tm

See Also:

Serialized Form

Field Summary

static java.awt.Color	aliphatics
static java.awt.Color	aromatics
static java.awt.Color	cysteines
static java.awt.Color	ellipsis

Constructor Summary

GPCRDB_ColorScheme()

Method Summary

java.awt.Color	getBackgroundColor(char label, int position) Returns the background color.
java.awt.Color	getForegroundColor(char label, int position) Returns the foreground color.
java.lang.String	getInformation() Returns a descriptive text about this ColorScheme.
java.lang.String	getShortName() Returns a shortname for this ColorScheme.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

aliphatics

public static java.awt.Color aliphatics

cysteines

public static java.awt.Color cysteines

aromatics

public static java.awt.Color aromatics

ellipsis

public static java.awt.Color ellipsis

Constructor Detail

GPCRDB_ColorScheme

public GPCRDB_ColorScheme()

Method Detail

getForegroundColor

public java.awt.Color getForegroundColor(char label,
                                         int position)

Returns the foreground color. The residue position is ignored for that purpose.

Specified by:

getForegroundColor in interface ResidueColorScheme

getBackgroundColor

public java.awt.Color getBackgroundColor(char label,
                                         int position)

Returns the background color. The residue position is ignored for that purpose.

Specified by:

getBackgroundColor in interface ResidueColorScheme

getShortName

public java.lang.String getShortName()

Description copied from interface: ResidueColorScheme

Returns a shortname for this ColorScheme. This string is typically less than 10 characters and can be presented to the user to let him choose between several colorscheme.

Specified by:

getShortName in interface ResidueColorScheme

getInformation

public java.lang.String getInformation()

Description copied from interface: ResidueColorScheme

Returns a descriptive text about this ColorScheme. This text should explain the choice and attribution of the colors to the residues of the sequences.

Specified by:

getInformation in interface ResidueColorScheme