edu.mssm.crover.domain2d
Class CtermDomain

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--javax.swing.JComponent
                    |
                    +--javax.swing.JPanel
                          |
                          +--edu.mssm.crover.domain2d.PrintablePanel
                                |
                                +--edu.mssm.crover.domain2d.TwoEndsDomain
                                      |
                                      +--edu.mssm.crover.domain2d.TwoEndsDraggableDomain
                                            |
                                            +--edu.mssm.crover.domain2d.FreeLoop
                                                  |
                                                  +--edu.mssm.crover.domain2d.ExtremityDomain
                                                        |
                                                        +--edu.mssm.crover.domain2d.CtermDomain

All Implemented Interfaces:

javax.accessibility.Accessible, CoolPrint, Domain2D, Drawing, java.awt.image.ImageObserver, java.awt.MenuContainer, java.util.Observer, java.io.Serializable

public class CtermDomain

extends ExtremityDomain

A C-terminal domain representation.

See Also:

Serialized Form

Field Summary

Fields inherited from class edu.mssm.crover.domain2d.FreeLoop

entryDirection, exitDirection, model, spacer, template, templateSelector

Fields inherited from class edu.mssm.crover.domain2d.TwoEndsDomain

delta_end, delta_start, end, first, last, position, quickDraw, rgf, rgra, rmf, solver, start

Fields inherited from class edu.mssm.crover.domain2d.PrintablePanel

SVG_ANCHOR_HREF_PROPERTY

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

CtermDomain()

CtermDomain(ResidueModelFactory rmf, ResidueGlyphFactory rgf, ResidueGlyphRenderingAttributes rgra)

Methods inherited from class edu.mssm.crover.domain2d.ExtremityDomain

connectEnd, connectStart, reset, setDirection

Methods inherited from class edu.mssm.crover.domain2d.FreeLoop

centerOf, computePreferredSize, dispose, enlargePreferredSize, getDirection, getModel, getTemplate, isOptimizedDrawingEnabled, layoutResidues, layoutResidues, paintComponent, setDragging, setModel, setRange, setSpacer, setTemplate, update

Methods inherited from class edu.mssm.crover.domain2d.TwoEndsDraggableDomain

setDBSDebug, setListener

Methods inherited from class edu.mssm.crover.domain2d.TwoEndsDomain

calculateDeltas, connectPosition, finalize, firstResiduePos, getComp, getComponent, getId, getLocation, getSurface, getX, getY, hideFirst, hideLast, lastResiduePos, paintBrushing, paintSelection, position, setId, setLocation, setLocation, suggestLocation, suggestLocation, syncLocation, useResidueModelFactory

Methods inherited from class edu.mssm.crover.domain2d.PrintablePanel

coolPrint, recurseSVGPrint, svgPrint

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface edu.mssm.crover.domain2d.Domain2D

calculateDeltas, connectPosition, dispose, firstResiduePos, getComp, getDirection, getId, hideFirst, hideLast, lastResiduePos, layoutResidues, position, setDragging, setId, setRange, setSpacer, useResidueModelFactory

Methods inherited from interface edu.mssm.crover.domain2d.Drawing

getComponent, getParent, getSurface, suggestLocation, suggestLocation

Constructor Detail

CtermDomain

public CtermDomain()

CtermDomain

public CtermDomain(ResidueModelFactory rmf,
                   ResidueGlyphFactory rgf,
                   ResidueGlyphRenderingAttributes rgra)