edu.mssm.crover.domain2d
Class BasicResidueGlyphRenderingAttributes

java.lang.Object
  |
  +--edu.mssm.crover.domain2d.BasicResidueGlyphRenderingAttributes

All Implemented Interfaces:

ResidueGlyphRenderingAttributes

public class BasicResidueGlyphRenderingAttributes

extends java.lang.Object

implements ResidueGlyphRenderingAttributes

Basic implementation of the ResidueGlyphRenderingAttributes interface. Stores the attributes and give them back when requested.

Field Summary

protected boolean

outline

Constructor Summary

BasicResidueGlyphRenderingAttributes()

BasicResidueGlyphRenderingAttributes(int shape, boolean outline)

Method Summary

boolean	getDefaultResidueGlyphOutline() Get the suggested default outline attribute.
int	getDefaultResidueShape() Get the shape of residues that are not hyperlinked.
int	getLinkedResidueShape() Get the shape of residues that are hyperlinked.
void	setDefaultResidueGlyphOutline(boolean outline) Sets the outline attribute for future instances of ResidueGlyph.
void	setDefaultResidueShape(int shape) Sets the shape of linked residues.
void	setLinkedResidueShape(int shape) Sets the shape of linked residues.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

outline

protected boolean outline

Constructor Detail

BasicResidueGlyphRenderingAttributes

public BasicResidueGlyphRenderingAttributes()

BasicResidueGlyphRenderingAttributes

public BasicResidueGlyphRenderingAttributes(int shape,
                                            boolean outline)

Method Detail

setDefaultResidueGlyphOutline

public void setDefaultResidueGlyphOutline(boolean outline)

Description copied from interface: ResidueGlyphRenderingAttributes

Sets the outline attribute for future instances of ResidueGlyph.

Specified by:

setDefaultResidueGlyphOutline in interface ResidueGlyphRenderingAttributes

Parameters:

outline - an outline display is suggested when true.

See Also:

for usage.

getDefaultResidueGlyphOutline

public boolean getDefaultResidueGlyphOutline()

Description copied from interface: ResidueGlyphRenderingAttributes

Get the suggested default outline attribute.

Specified by:

getDefaultResidueGlyphOutline in interface ResidueGlyphRenderingAttributes

setLinkedResidueShape

public void setLinkedResidueShape(int shape)

Description copied from interface: ResidueGlyphRenderingAttributes

Sets the shape of linked residues. Hyperlinked residues will have this shape by default. * When not set, linked residues have the same shape that non linked residues. Invalid shapes are silently ignored. * @param Type of the shape, as defined in ResidueGlyph

Specified by:

setLinkedResidueShape in interface ResidueGlyphRenderingAttributes

See Also:

ResidueGlyph.CIRCLE_SHAPE, edu.mssm.crover.domain2d.ResidueGlyph#RECTANGULAR_SHAPE, *

setDefaultResidueShape

public void setDefaultResidueShape(int shape)

Description copied from interface: ResidueGlyphRenderingAttributes

Sets the shape of linked residues. Residues will have this shape by default, unless hyperlinked. When not set, the shape of residues defaults to circles. Invalid shapes are silently ignored.

Specified by:

setDefaultResidueShape in interface ResidueGlyphRenderingAttributes

See Also:

ResidueGlyph.CIRCLE_SHAPE, edu.mssm.crover.domain2d.ResidueGlyph#RECTANGULAR_SHAPE, ResidueGlyph.OCTAGONAL_SHAPE

getLinkedResidueShape

public int getLinkedResidueShape()

Description copied from interface: ResidueGlyphRenderingAttributes

Get the shape of residues that are hyperlinked.

Specified by:

getLinkedResidueShape in interface ResidueGlyphRenderingAttributes

Returns:

Shape of the residues.

See Also:

for shape definitions.

getDefaultResidueShape

public int getDefaultResidueShape()

Description copied from interface: ResidueGlyphRenderingAttributes

Get the shape of residues that are not hyperlinked.

Specified by:

getDefaultResidueShape in interface ResidueGlyphRenderingAttributes