edu.mssm.crover.bturns
Class ResidueComposition

java.lang.Object
  |
  +--edu.mssm.crover.bturns.ResidueComposition

public class ResidueComposition
extends java.lang.Object

Computes the composition percentages in helical, beta and coil residues from a DSSP file.


Constructor Summary
ResidueComposition()
           
 
Method Summary
static Table convert(Table DSSP_source)
           
static Table convert(Table DSSP_source, java.lang.String brookid, char chainid)
          The composition is returned in a table of floats, one row for each chain.
static void main(java.lang.String[] args)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ResidueComposition

public ResidueComposition()
Method Detail

convert

public static Table convert(Table DSSP_source)
                     throws TreatmentInterrupted
TreatmentInterrupted

convert

public static Table convert(Table DSSP_source,
                            java.lang.String brookid,
                            char chainid)
                     throws TreatmentInterrupted
The composition is returned in a table of floats, one row for each chain. Extract only the records which chainid match chainid. A '*' character can be passed as the chainid, in this case, all the chains are converted to turn records.

TreatmentInterrupted

main

public static void main(java.lang.String[] args)


Copyright @ 2003 Mount Sinai School of Medicine. All Rights Reserved.