edu.mssm.crover.bturns
Class ResidueComposition

java.lang.Object
  |
  +--edu.mssm.crover.bturns.ResidueComposition

public class ResidueComposition

extends java.lang.Object

Computes the composition percentages in helical, beta and coil residues from a DSSP file.

Constructor Summary

ResidueComposition()

Method Summary

static Table	convert(Table DSSP_source)
static Table	convert(Table DSSP_source, java.lang.String brookid, char chainid) The composition is returned in a table of floats, one row for each chain.
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ResidueComposition

public ResidueComposition()

Method Detail

convert

public static Table convert(Table DSSP_source)
                     throws TreatmentInterrupted

TreatmentInterrupted

convert

public static Table convert(Table DSSP_source,
                            java.lang.String brookid,
                            char chainid)
                     throws TreatmentInterrupted

The composition is returned in a table of floats, one row for each chain. Extract only the records which chainid match chainid. A '*' character can be passed as the chainid, in this case, all the chains are converted to turn records.

TreatmentInterrupted

main

public static void main(java.lang.String[] args)