Constant Field Values

Contents

• edu.mssm.*

edu.mssm.*

edu.mssm.crover.beans.LooseTabbedPane

public static final int	EMBED_STATE	0
public static final int	INDEPENDANT_STATE	1

edu.mssm.crover.beans.LooseTabbedPane.FlyingElement

protected static final int	ATTACHED	0
protected static final int	IN_DESK	2
protected static final int	INDEPENDANT	1

edu.mssm.crover.beans.TabFocusEvent

public static final int	GAINED_FOCUS	1
public static final int	LOST_FOCUS	2

edu.mssm.crover.domain2d.AbstractLoopTemplate

protected final int	FIT	0
protected final int	TIMEOUT_EXPIRED	0
protected final int	TOO_MUCH_RESIDUES	2
protected final int	UNDEFINED	3

edu.mssm.crover.domain2d.DefaultHelixModel

public static final int	LEFT_HANDED	1
public static final int	RIGHT_HANDED	2

edu.mssm.crover.domain2d.ExtremityModel

public static final int	CTERM	2
public static final int	NTERM	1

edu.mssm.crover.domain2d.GlyphLinkImpl

public static final int	SHAPE_CIRCLE	1
public static final int	SHAPE_RECTANGLE	2
public static final int	SHAPE_UNSUPPORTED	0

edu.mssm.crover.domain2d.HelicalDomain

public static final int	LEFT_HANDED	1
public static final int	RIGHT_HANDED	2

edu.mssm.crover.domain2d.HelixModel

public static final int	LEFT_HANDED	1
public static final int	RIGHT_HANDED	2

edu.mssm.crover.domain2d.PrintablePanel

public static final java.lang.String

SVG_ANCHOR_HREF_PROPERTY

"svg.anchor.href"

edu.mssm.crover.domain2d.ProteinSegmentLinkImpl

public static final int	SHAPE_CIRCLE	1
public static final int	SHAPE_RECTANGLE	2
public static final int	SHAPE_UNSUPPORTED	0

edu.mssm.crover.domain2d.ResidueGlyph

public static final int	CIRCLE_SHAPE	1
public static final int	OCTAGONAL_SHAPE	3
public static final int	RECT_SHAPE	2

edu.mssm.crover.domain2d.ResidueModel

public static final int	CIRCULAR_SHAPE	1
public static final int	OCTAGONAL_SHAPE	3
public static final int	RECT_SHAPE	2

edu.mssm.crover.domain2d.RExpression

protected final double

epsilon

1.0E-4d

edu.mssm.crover.domain2d.rbdg.xml.types.FormatType

public static final int	GIF_TYPE	0
public static final int	JPG_TYPE	1
public static final int	SVG_TYPE	2

edu.mssm.crover.ims.IMSConstants

public static final java.lang.String	ACCESSGROUPDIRECTORY	"ims::AccesGroupDirectory"
public static final int	ADMIN_USER	0
public static final java.lang.String	ALL	"all"
public static final int	AUTHORIZED_USER	2
public static final java.lang.String	DBNAME	"FastObjects://icb2/ims_base"
public static final java.lang.String	IMS	"ims::"
public static final java.lang.String	kDBTypeParam	"dbType"
public static final java.lang.String	kIMSDBNameParam	"imsDBName"
public static final java.lang.String	kSubmCatParam	"submissioncatalog"
public static final java.lang.String	kUserDirParam	"userdirectory"
public static final int	NEW_USER	1
public static final int	REVIEWER_USER	3
public static final java.lang.String	SUBMISSION	"submission"
public static final java.lang.String	SUBMISSIONCATALOG	"ims::SubmissionCatalog"
public static final java.lang.String	USER	"user"
public static final java.lang.String	USERDIRECTORY	"ims::UserDirectory"
public static final int	VIEWDATA	2
public static final int	VIEWTITLE	1

edu.mssm.crover.ims.tasks.TaskManager

public static final long	ONE_DAY	86400000l
public static final long	ONE_HOUR	3600000l
public static final long	ONE_MINUTE	60000l
public static final long	ONE_WEEK	604800000l

edu.mssm.crover.ims.tasks.TaskStatus

public final int	ACCEPTED	1
public final int	COMPLETED	3
public final int	FAILED	4
public final int	SCHEDULED	0
public final int	STARTED	2
public final int	TO_BE_SCHEDULED	-1

edu.mssm.crover.ims.tasks.rmi.TaskManagerRMIServer

public static final int	ONE_DAY	86400000
public static final int	ONE_HOUR	3600000
public static final int	ONE_MINUTE	60000
public static final int	ONE_WEEK	604800000

edu.mssm.crover.ims.tasks.rmi.TaskManagerRMIServerImpl

public static final int	ONE_DAY	86400000
public static final int	ONE_HOUR	3600000
public static final int	ONE_MINUTE	60000
public static final int	ONE_WEEK	604800000

edu.mssm.crover.ims.users.Address

public static final int	ADDRESS1	0
public static final int	ADDRESS2	1
public static final int	CITY	2
public static final int	COUNTRY	5
public static final int	STATE	3
public static final int	ZIP	4

edu.mssm.crover.ims.users.Affiliation

public static final int	DEPARTMENT	1
public static final int	INSTITUTION	0
public static final int	PHONE	2

edu.mssm.crover.ims.users.IMSUser

public static final int	EMAIL	4
public static final int	FAX	6
public static final int	FIRSTNAME	0
public static final int	LASTNAME	1
public static final int	PASSWORD	3
public static final int	PHONE	5
public static final int	TITLE	7
public static final int	USERNAME	2

edu.mssm.crover.joe.JoeTool

public static final java.lang.String

SHORTNAME

"joe-tool"

edu.mssm.crover.joe.Log

public static final int	ALL_BUT_DEBUG	127
public static final int	ALL_SUPPORTED_SEVERITY_FLAGS	255
public static final int	DEBUG	128
public static final int	EXCEPTIONS	64
public static final int	FATAL	16
public static final int	INFO	1
public static final int	PROBLEM	4
public static final int	SEVERE	8
public static final int	SILENT	0
public static final int	VERBOSE	32
public static final int	WARNING	2

edu.mssm.crover.mutations.drivers.Mutation

public static final short	CHIMERA	8
public static final short	DELETION	2
public static final short	INSERTION	4
public static final short	POINT_MUTATION	1

edu.mssm.crover.mutations.drivers.MutationType

public static final short	_CHIMERA	8
public static final short	_DELETION	2
public static final short	_INSERTION	4
public static final short	_POINT_MUTATION	1

edu.mssm.crover.odmg.objectstore.Database

public static final int	NOT_OPEN	0
public static final int	OPEN_EXCLUSIVE	3
public static final int	OPEN_READ_ONLY	1
public static final int	OPEN_READ_WRITE	2

edu.mssm.crover.odmg.objectstore.Transaction

public static final int	READ	1
public static final int	UPGRADE	2
public static final int	WRITE	4

edu.mssm.crover.representation.ExtendedSS_Annotation

public static final int

SEGMENT_TYPE

3

edu.mssm.crover.representation.SecondaryStructure_Annotation

public static final int	BETA_TYPE	1
public static final int	HELIX_TYPE	0
public static final int	TURN_TYPE	2

edu.mssm.crover.representation.TmDomain_Annotation

public static final int	CYTOSOL	1
public static final int	EXTRACELLULAR	2
public static final int	IN	1
public static final int	MEMBRANE	3
public static final int	OUT	2

edu.mssm.crover.scentral.MenuBar

public static final java.lang.String	backgroundColor	"#FFFFFF"
public static final int	imageBorderSize	0
public static final boolean	setBackgroundColor	false

edu.mssm.crover.scentral.PersistenceScheme

public static final int	OWNER_REFERENCE_ID	0
public static final int	USER_SESSION_KIND	1

edu.mssm.crover.scentral.PersistenceScheme_JDBC_Impl

protected static final java.lang.String

DATABASE_DIAGRAM_KIND_STRING

"diagram"

edu.mssm.crover.scentral.ServletCentral

public static final java.lang.String	footerBackgroundColor	"#A0CCCC"
public static final java.lang.String	GUEST_LOGIN	"guest login"
public static final java.lang.String	GUEST_REQUEST_SUBMIT_NAME	"guest_request_submit"
public static final java.lang.String	LOGIN_NAME	"login"
public static final java.lang.String	PASSWORD_NAME	"password"
public static final java.lang.String	REGISTERED_SUBMIT_NAME	"registered_login_submit"
public static final java.lang.String	RELATIVE_REDIRECT_URL	"dest"
public static final java.lang.String	SERVICE_MANAGER_VALUE	"service_manager"
public static final java.lang.String	USER_SESSION_VALUE	"UserSession"

edu.mssm.crover.scentral.UserRecord

public static final java.lang.String	ADDRESS_LINE1_PARAM	"address1"
public static final java.lang.String	ADDRESS_LINE2_PARAM	"address2"
public static final java.lang.String	CITY_PARAM	"city"
public static final java.lang.String	COMPANY_NAME_PARAM	"company"
public static final java.lang.String	COUNTRY_PARAM	"country"
public static final java.lang.String	DEPARTMENT_PARAM	"department"
public static final java.lang.String	EMAIL_PARAM	"email"
public static final java.lang.String	FAX_PARAM	"fax"
public static final java.lang.String	FIRST_NAME_PARAM	"first_name"
public static final java.lang.String	KIND_PARAM	"kind"
public static final java.lang.String	LAST_NAME_PARAM	"last_name"
public static final java.lang.String	MIDDLE_NAME_PARAM	"middle_name"
public static final java.lang.String	PASSWORD_CHECK_PARAM	"passwd-check"
public static final java.lang.String	PASSWORD_PARAM	"passwd"
public static final java.lang.String	PHONE_PARAM	"phone"
public static final java.lang.String	STATE_PARAM	"state"
public static final java.lang.String	USERID_PARAM	"user_id"
public static final java.lang.String	ZIP_PARAM	"zip"

edu.mssm.crover.tools.blast.BlastCommand

public static final int	OUTPUT_PAIRWISE	0
public static final int	OUTPUT_XML	7
public static final int	TYPE_DNA	0
public static final int	TYPE_PROTEIN	1

edu.mssm.crover.tools.blast.BlastGeneProduct

public static final int

OUTPUT_PAIRWISE

0

edu.mssm.crover.tools.tissue.getCuratedTissue

public static final java.lang.String

hierarchy_package

"edu.mssm.crover.tools.tissue.hierarchy."

edu.mssm.crover.tools.tissue.Hierarchy

public final java.lang.String

DEFAULT_HIERARCHY_PACKAGE

"edu.mssm.crover.tools.tissue.hierarchy."

edu.mssm.crover.tools.tm.HmmTopLocal

public static final java.lang.String	DEFAULT_COMMAND_NAME	"hmmtop"
public static final java.lang.String	DEFAULT_COMMAND_PATH	"/home/icb/softs/hmmtop/current/mips/bin"

edu.mssm.crover.tools.tm.TmHmmSocket

public final java.lang.String

DELIMITER

"-----------------------------22782101022818"

edu.mssm.crover.tools.tm.TmHmmWeb

public final java.lang.String

DELIMITER

"-----------------------------22782101022818"

edu.mssm.crover.tools.tm.TmPredictors

public static final java.lang.String	DEFAULT_TM_PREDICTOR_CLASS_NAMES	"default.HmmTopLocal"
public static final java.lang.String	DEFAULT_TM_PREDICTOR_PACKAGE	"edu.mssm.crover.tools.tm"

edu.mssm.crover.util.GeneProductPredictor

public static final int	ARABIDOPSIS	3
public static final int	MAIZE	2
public static final int	VERTEBRATES	1

edu.mssm.crover.util.PhdHtmTM

public static final java.lang.String	DEFAULT_COMMAND_NAME	"phd.solx86"
public static final java.lang.String	DEFAULT_COMMAND_PATH	"/home/icb/softs/phd"

edu.mssm.crover.webapps.ims.input.prototype.PhosphoParams

public static final int	K_1	3
public static final int	K1	2
public static final int	KM	0
public static final int	KP	4
public static final int	RATIO	5
public static final int	VMAX	1

edu.mssm.crover.webservices.rbde.DS_PersistenceScheme

public static final int	CUSTOMIZED_DIAGRAM_KIND	2
public static final int	OWNER_REFERENCE_ID	0

edu.mssm.crover.webservices.rbde.DS_PersistenceScheme_JDBC_Impl

public static final java.lang.String

DATABASE_DIAGRAM_KIND_STRING

"diagram"

edu.mssm.crover.webservices.rbde.LibraryObjectForm

public static final java.lang.String	CreateForm_description_paramName	"CreateForm_description"
public static final java.lang.String	CreateForm_formKind_paramValue	"CreateForm"
public static final java.lang.String	CreateForm_name_paramName	"CreateForm_name"
public static final java.lang.String	DeleteForm_formKind_paramValue	"DeleteForm"
public static final java.lang.String	DeleteForm_objectID_paramName	"DeleteForm_objectID"
public static final java.lang.String	formKind_paramName	"LibraryObjectForm_kind"
public static final java.lang.String	GetForm_formKind_paramValue	"GetForm"
public static final java.lang.String	GetForm_objectID_paramName	"GetForm_objectID"
public static final java.lang.String	ListForm_formKind_paramValue	"ListForm"
public static final java.lang.String	ListForm_objectID_paramName	"ListForm_objectID"
protected static final java.lang.String	table_header_color	"#5573D1"
public static final java.lang.String	UpdateForm_description_paramName	"UpdateForm_description"
public static final java.lang.String	UpdateForm_formKind_paramValue	"UpdateForm"

edu.mssm.crover.webservices.rbde.MutantSubServiceState

public static final int	CHOOSE_SERVER	1
public static final int	INVALID_INTERACTION_STATE	0
public static final int	QUERY_DISPLAY	2

edu.mssm.crover.webservices.rbde.Mutations

public final int

SERVE_FRAMESET_DOCUMENT

3

edu.mssm.crover.webservices.rbde.URLTestPage

public final int

SERVE_FRAMESET_DOCUMENT

3