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abdominal_ganglion abducens_nerve AbstractAnnotationsToDrawings AbstractLoopTemplate AbstractWorker AccessGroup AccessGroupDirectory AccessGroupManager AccessionCode accessory_nerve AccessRights AccessRightsManager AccessRightsManagerTest AddAdditionalInfoToMutant AddRbdgXML Address AddToTable adipose adrenal_cortex adrenal_gland Affiliation Aggregation agranulocyte AlgorithmicLoopTemplate Alignment AlignmentFormatter AlignmentLineRepresentation AlignmentModifier AlignmentQuery AlignmentReader AlignmentSelection AlignmentSubSelection AlignmentViewer AlignSeqPos all AlnID AlnValidator alveolar_macrophage alveoli amnion amygdala AnnotatedBioSequence Annotation AnnotationParser Annotations Annotations AnnotationsDescriptor AnnotationsToDrawings AnnotationSupport aorta appendix arachnoidea_mater ArcadiaAlignedSequence ArcadiaAlignment ArrayTable artery ascending_colon astrocyte AtEditorNode atrium AttributesInputPage auditory_nerve autonomic_NS axon b_cell BadPersistentID BadUserID BasicResidueGlyphRenderingAttributes basophil BatchSubmissionDriver BetaStrandDomain BetaStrandModel BezierPath BiologicalAlignment BiologicalAnnotation BiologicalAnnotations BiologicalDescription BiologicalOrigin BiologicalSequence bladder BlastCommand BlastContext BlastGeneProduct BlastHits BlastHitsDescriptor BlastOutput BlastOutput BlastOutput BlastOutput_Hits BlastOutput_HitsDescriptor BlastOutput_Iterations BlastOutput_Iterations BlastOutput_IterationsDescriptor BlastOutput_IterationsDescriptor BlastOutput_IterationsType BlastOutput_IterationsType BlastOutput_IterationsTypeDescriptor BlastOutput_IterationsTypeDescriptor BlastOutput_Param BlastOutput_Param BlastOutput_Param BlastOutput_ParamDescriptor BlastOutput_ParamDescriptor BlastOutput_ParamDescriptor BlastOutput_ParamType BlastOutput_ParamType BlastOutput_ParamTypeDescriptor BlastOutput_ParamTypeDescriptor BlastOutput_Stat BlastOutput_StatDescriptor BlastOutputDescriptor BlastOutputDescriptor BlastOutputDescriptor BlastResult blood blood_vessel bone bone_marrow bowel brain brain_stem breast bronchii brown_adipose BrushingModel BrushingMouseListener ca_position caecum cardiac_muscle cartilage caudate_nucleus cd2ps central_NS cerebellum cerebral_cortex cerebrum cervix checkLibrary Chimera ChimeraDescriptor choroid ChunkIterator circulatory circumvallate_papillae cleanAlignment CLI client cochlea CodonTable coeliac_ganglion colon Color_Annotation ColorAnnotationsColorScheme Colors ColorScheme ColorSchemeDescriptor ColorsDescriptor ColumnIdentifierLengthException ColumnTypeException CommandLineOptions CommandNotInstalled CompareSeqSets CompleteSubmission CompositionTableTreatment CompositionTableTreatmentParameter cones ConfirmSNP ConnectionPool ConnectionPool connective_tissue ConstrainedPoint ControlPoints ControlPoints ControlPointsDescriptor ControlPointsDescriptor convertFrom1_0 CoolPrint CoolPrintRescale CopySStoTM CopyTMtoSS cornea corpora_quadrigemina corpus_callosum corpus_luteum corpus_striatum Cpoint Cpoint CpointDescriptor CpointDescriptor cranial_nerves cranium CreateMutant CreateSNP CreateSubmissionForm CroverSeqLeakTest CtermDomain CuratedTissue CustomizedDiagram CustomizedDiagram2_0 CustomizedDiagramImpl1_0 CustomizedDiagramImpl1_1 CustomizedDiagramImpl3_0 CustomizedDiagramImpl4_0 CustomizedDiagramImpl5_0 cutal Database DatabaseErrorException DatabaseNotAvailableException DatabaseNotFound DataPacket DayhoffMatrix DBConnection DBConnection DBConnectionPool DBConstants DbestParser Dblinks DblinksDescriptor DBSModel DBUtil DBUtil DefaultHelixModel Define DefineDescriptor Deletion DeletionDescriptor dendrite descending_colon Description Diagram Diagram DiagramAnnotationsToDrawingsImpl DiagramAttributesEditor DiagramAttributesForm DiagramDescriptor DiagramLayout DiagramLayout DiagramLayoutDescriptor DiagramLayoutDescriptor DiagramLibrary DiagramLibraryNode DiagramMapProcessing DiagramMenuBar DiagramService diaphragm diencephalon digestive DiMLibDriver DiMLibForm DiMLibQueryServletSessionManager DiMLibServletSession DiMLibServletSessionManager DimlibSubmission DimlibSubmissionDescriptor DiMLibViewerServletSessionManager Direction Direction DirectionDescriptor DirectionDescriptor DirectWorker DisulfidBridgeDrawing DisulfidBridgeTranslator Disulfide_Annotation DisulfideBridge DisulfideBridgeDescriptor Domain_Annotation Domain2D Domain2D_ABuilder Domain2D_Annotation Domains DomainUpdateScheme dorsal_root_ganglion DownloadCustomizedDiagram DraggingModel Drawing DrawingSurface DriverInformation DS_PersistenceScheme DS_PersistenceScheme_JDBC_Impl DS_UserSession DSet DSet DSLayoutManager DSSPTableReader DSSPtoTurns DummySolver DumpTissueInfo duodenum dura_mater ear ectoderm Elipses Elipses Elipses ElipsesDescriptor EllipsisGlyph endocrine endoderm endometrium enteric_NS entorhinal_cortex eosinophil epidermis epididymis epithalamus epithelium ErrorOut esophagus EventType Exclude ExcludeDescriptor exocrine ExportAln ExportXML ExtantProteinModification Extended_ColorAnnotation ExtendedSS_Annotation ExtendedSwissProtReader ExternalReferences ExternalReferences ExternalReferencesImpl extract ExtractAC ExtractAcIdentity ExtractDefLine ExtractTurns ExtremityDomain ExtremityModel eye facial_nerve FailTaskEngine fallopian_tube FastaFormat FastaReader FastaReaderType FastDiagramMode FastDiagramModeNode FetchURL fibroblast FileContentTaskData FileResult FileTaskData FillIn3DFourierOptions FillInFourierOptions FillInHydroOptions FillInVolumeOptions FillTIWebTableTaskData FillTIWebTableTaskEngine Filter firsttool ForEachTest ForgottenPassword FormatType FormatTypeDescriptor FortranOutputParser FragmentIdentityScoreEngine FreeLoop FreeLoopModel frontal_cortex frontal_lobe gall_bladder ganglion gastrocolic_omentum GeneProductPredictor GenericPosition GenericSchemaManager GenScan getAAComposition GetCeleraSeq getCuratedTissue GetDiagram GetDiagramNode GetForm getNulls GifMap gland glia glomerulus glossopharyngeal_nerve GlyphLink GlyphLinkImpl gonad GPCRDB_ColorScheme gpcrMotif granulocyte GroupOfTasks gum gut head heart HelicalDomain HelixLayout HelixModel Hello HelloForm HelloServletSessionManager Hierarchy HierarchyKeywords hippocampus histiocyte Hit Hit Hit Hit Hit_Hsps Hit_Hsps Hit_Hsps Hit_HspsDescriptor Hit_HspsDescriptor Hit_HspsDescriptor Hit_HspsType Hit_HspsType Hit_HspsTypeDescriptor Hit_HspsTypeDescriptor HitDescriptor HitDescriptor HitDescriptor HitDescriptor HitSummary HitType HitType HitTypeDescriptor HitTypeDescriptor HmmTop HmmTopLocal HomeNode Hsp Hsp Hsp HspDescriptor HspDescriptor HspDescriptor HspType HspType HspTypeDescriptor HspTypeDescriptor HTMLAlignmentFormatter HTMLFormatter HumanLocus HydrophobicityOptions hypoglossal_nerve hypothalamus Identification ileum Image ImageDescriptor ImageMap ImageMapDescriptor Implementation Implementation ImportWTP ImportXML IMS IMSConstants IMSError IMSException IMSForm IMSGenericForm IMSManager IMSObject IMSSchemaManager IMSServletSession IMSServletSessionManager IMSUser IMSUserHome IMSUserManager IMSUserManagerTest IMSUserSchemaManager IMSUtil InadequateBindingException InadequateDestinationException InadequateSourceException Include IncludeDescriptor IncorrectStateException inferior_parathyroid InputPhosphoParams Insertion InsertionDescriptor InsertSubmission Inspect InstanceIterator InstanceIterator interneuron InvalidArgumentException InvalidColumnException InvalidDomain InvalidFieldLimits InvalidLocationException InvalidMotifException InvalidMutationException InvalidRange InvalidResidueException InvalidSNPException InvalidState InvalidSubmissionException InvalidTMException InvalidURLError iris Iteration Iteration Iteration_Hits Iteration_Hits Iteration_HitsDescriptor Iteration_HitsDescriptor Iteration_HitsType Iteration_HitsType Iteration_HitsTypeDescriptor Iteration_HitsTypeDescriptor Iteration_Stat Iteration_Stat Iteration_StatDescriptor Iteration_StatDescriptor Iteration_StatType Iteration_StatType Iteration_StatTypeDescriptor Iteration_StatTypeDescriptor IterationDescriptor IterationDescriptor IterationType IterationType IterationTypeDescriptor IterationTypeDescriptor JAboutDialog JDBCTable JDOFactory jejunum Joe JoeImpl JoeTool JPanelImage KeepAllFilter kidney kupffer_cell lacrimal_gland large_intestine larynx LayoutController LayoutParser LayoutPicker LayoutSSEditor LayoutSSFormDisplay LeakTest LeakTester LegalDisclaimer lens leptomeninges leukocyte LibraryObjectForm LibraryObjectFormProcessor LibraryObjectInfo Link LinkDescriptor Links LinksDescriptor ListDiagrams ListDiagramsNode ListTestServletSessionManager LiteratureReference LiteratureReferenceImpl LiteratureReferences LiteratureReferencesImpl LitRefSorter liver Locus Locus LocusLinkFilter LocusLinkTableReader LocusSyntaxErrorException Log LogImpl LoginExpression LoginForm LogoutNode LongResult LoopTemplate LoopTemplateSelector LoopTemplateSelectorImpl LooseTabbedPane lung lymph lymph_node lymphatic lymphocyte macrophage MailAlert MakeNewProteinEntry MakeTissueListTaskData MakeTissueListTaskEngine mammary_gland mapcdna Mapping mapstrength MapStrengthStats MaskSequenceTaskData MaskSequenceTaskEngine Match Matrix medulla_oblongata MegablastHSIterator MegablastTaskData MegablastTaskEngine MemLeakTestDiagram MenuBar mesencephalon mesoderm Messages metencephalon microglia MinesetTableReader MinesetTableWriter MissingFormParameterException MissingFormParameterException MissingInformation monocyte MonotonousColorScheme MotifFinder motor_neuron mouth MPSorter MultiplePartFileIterator MultiPointLoopTemplate MultiTasks muscle Mutant Mutant MutantAdditionalInfo MutantDescriptor MutantID MutantProtein MutantProteinTest MutantQuery MutantQueryExtended Mutants MutantsDescriptor MutantSubServiceState Mutation Mutation_Annotation MutationDriver MutationDriverCache MutationDriverFactory MutationDriverFactoryImpl MutationFilters MutationManager MutationNode MutationParser Mutations Mutations MutationsDescriptor MutationsItem MutationsItemDescriptor MutationSorter MutationsToURLs MutationToUrlConverter MutationType MutationValidator myelencephalon myenteric_plexus myometrium NBezierPath NCBISequences neocortex neostriatum nervous_system neural_retina neuron neutrophil NewAlnSubmission NewLayoutInputEditor NewProteinViewer NewSubmission NilEngine NoResult nose NoSuchResidue NotAVisualBean nucleus_accumbens occipital_lobe oculomotor_nerve ODMG ODMG olfactory_nerve oligodendrocyte optic_nerve Options OptionsDescriptor OrderedTable Origin OriginFactory osteoclast Other_Protein Other_ProteinDescriptor Output OutputDescriptor ovary oviduct Page PageDescriptor paleostriatum pancreas pancreatic_islets Paper PaperDescriptor PaperViewer ParallelTask ParallelTasks Parameters Parameters Parameters ParametersDescriptor ParametersDescriptor ParametersDescriptor ParametersType ParametersType ParametersTypeDescriptor ParametersTypeDescriptor parasympathetic_NS parathyroid parietal_lobe parotid Parser Parser Parser PasswordDoesNotMatch PdbChainHomology PdbDistances PDBReader PDBReaderOrigin PDBReaderType penis peripheral_NS peritoneal_macrophage peritoneum peroneal_nerve PersistenceScheme PersistenceScheme_JDBC_Impl PersistenceScheme_nil_Impl PersistenceScheme_Serialization_Impl PersistenceTest pharyngeal_gland pharynx PhdHtmTM pheromone_gland PhosphoParams pia_mater pigmented_retinal_epithelium pineal_gland PIRReader PIRReaderType pituitary placenta plasma platelet PointMutation PointMutationDescriptor pons PredefinedColors PrintablePanel PrintRbDgFile PrintSVG ProfileForm ProfileSearchForm prosencephalon prostate Protein Protein ProteinDescriptor ProteinDescriptor ProteinID ProteinSegmentDomain ProteinSegmentLinkImpl ProteinSegmentModel ProteinSelection ProteinSelectionExtended ProtocolError putamen pylorus QuerySequence QuerySequenceDescriptor QueryTable RAdd RandomAccessAlignment RandomSample RangeNotFoundException RbDe RbdeDiagram RbdeDiagramDescriptor rbdg RbdgXMLGenerator RConstAdaptor RConstant RDB ReaderType rectum red_blood_cell References ReferencesDescriptor ReflexPoint RegisterAffForm RegisterUserForm RegistrationDesk RegistrationDeskNode RegistrationDeskNode RegistrationFailure RegistrationForm RemoveHTMLTags replaceRawTissue Reporter ReportForm ReportParser REqual Rescheduler Residue ResidueAnnotation ResidueAttributesEditor ResidueAttributesForm ResidueBackground ResidueBackgroundDescriptor ResidueColor ResidueColorDescriptor ResidueColorScheme ResidueComposition ResidueDescriptor ResidueExchangeMatrix ResidueGlyph ResidueGlyphFactory ResidueGlyphFactoryImpl ResidueGlyphRenderingAttributes ResidueModel ResidueModelFactory ResidueNumberingDrawings ResidueShape ResidueShapeDescriptor ResourceFile respiratory RestrictedUserRecord retina RExpression RGE rhinencephalon rhombencephalon RInvalidChange RMITask RMIWorker RobustParallelTask RobustParallelTaskEngine rods RootObject Rotator RSub RunnableTransactionDriver RunnableTxnTest RVariable salivary_gland SaveDiagram SaveDiagramNode ScanForTms Scheduler sciatic_nerve ScoreEngine SearchForm SearchKinase SearchSelect SearchSelectParams SearchSubstrate sebaceous_gland SecondaryStructure SecondaryStructure_Annotation SecondaryStructureDescriptor SecondaryStructureEdit SecondaryStructureEditor SecondaryStructureEditorTest Segment SegmentDescriptor SelectedModel SelectInteraction SelectionToVisualization seminiferous_tubules sensory_neuron sensory_somatic_NS seqinfo Sequence SequenceChunkIterator SequenceDiagramGif SequenceDiagramSVG SequenceDisplay SequenceID SequenceIDHelper SequenceIDHolder SequenceInputEditor SequenceNode SequenceOrigin_Annotation SequenceRange SequenceReader SequenceReaderFactory SequenceReaderFactoryImpl SequenceRepository SequenceRepositoryHelper SequenceRepositoryHolder SequenceResult SequenceTask SequenceTaskData SequenceTaskFailureException SequenceTest SeqUtils SerializedFileResult serum ServiceManager ServletCentral SessionError SessionLogin SessionLogout Setup SharedResidueModelFactory ShowDiagram ShowPReaction sid sigmoid_colon SimpleMailer SimpleTM skeletal_muscle skin SleepTaskEngine small_intestine smask smooth_muscle Snp SNP SnpDescriptor SnpID SNPQuery Snps SnpsDescriptor SNPSelection SNPValidator SNPViewer solitary_tract Solver SolverInternalError SortTableTreatment SosuiResult SourceNotAvailable Spacer Spacer Spacer_Annotation SpacerAdjustment SpacerDescriptor SpacerDescriptor sperm spinal_cord spinal_nerves spleen splenocyte splitfile SSEditor SSEditorNode SSFormDisplay SSSequenceRange Start Start StartNode StateNode Statistics Statistics Statistics StatisticsDescriptor StatisticsDescriptor StatisticsDescriptor StatisticsType StatisticsType StatisticsTypeDescriptor StatisticsTypeDescriptor stellate_ganglion stomach StoreDiagram StoreNewLayout striated_muscle strim StringAppender StringConverter StringResult StubForSequenceRepository Submission SubmissionCatalog SubmissionEvent SubmissionHome SubmissionManager SubmissionOwnerNotFoundException SubmissionSchemaManager SubmissionSearch Submitter SubmitterDescriptor SubmitterInfo substantia_nigra subthalamus Subunit Subunit SubunitDescriptor SubunitDescriptor SubunitRef SubunitRefDescriptor sumColumns SumSometimeTaskEngine SumTaskData SumTaskEngine superior_cervical_ganglion superior_parathyroid SVGAlignmentFormatter SVGDiagram SwissProtReader SwissProtReaderOrigin SwissProtReaderType SwissProtSearchURL SwitchExpression SwitchTest SwitchTestServletSessionManager sympathetic_ganglion sympathetic_NS synovia synovium SyntaxErrorException SyntaxErrorException t_cell TabFocusEvent TabFocusListener Table Table.RowIterator TableActivityWatcher TableReader TableTreatment TabTokenizer Task TaskControl TaskData TaskEngine TaskFailedException TaskListener TaskManager TaskManagerRMIServer TaskManagerRMIServerImpl TaskNotFoundException TaskResult TaskRunningException TaskStatus TaskWatch telencephalon temporal_cortex temporal_lobe TestFormatters testis TestOracleConnection TestReuse TestReuseServletSessionManager TestTabTokenizer TestTaskEngines TextAlignmentFormatter thalamus thoracic_ganglion ThreadLocalDBConnection thymus thyroid tiambiguity tibial_nerve tidyHD tidySeq tiimport timegablast TIMegablastTaskData TIMegablastTaskEngine TinyGrapDriver tiquery TIQueryTaskData TIQueryTaskEngine tisearch TissueCuration TissueDetails TissueInfo TissueInfo TissueInfo_CacheImpl TissueInfo_JDBCImpl TissueInfo_MemoryImpl TissueInfoDescriptor TissueInfoForm TissueInfoNotAvailableException TissueInformation TissueInfoServletSessionManager TissueInfoStartForm TissueInfoUpdateScheme TissueSelection TissueSelectionHelper TissueSummary TIWeb TIWeb_JDBCImpl TIWebMinesetReader TIWebUpdateScheduler TM_Annotation Tm_Domain Tm_DomainDescriptor Tm_Segment Tm_SegmentDescriptor TmBundle TmBundle TmBundleDescriptor TmBundleDescriptor TmDomain_Annotation TMEditor TMFormDisplay TmHmmSocket TmHmmWeb tmMotif tmMotifType TmPredictor TmPredictors TMPropServletSession TMPropServletSessionManager TMPropStart TMValidator Tokey TokeyDescriptor tongue tonsil TooManyRescheduleException tooth ToTurnsTableTreatment ToTurnsTableTreatmentParameter trachea Transaction TransactionDriver TransactionManager TransactionNotFoundException transverse_colon Treatment TreatmentInterrupted trigeminal_ganglion trigeminal_nerve trochlear_nerve TurnAssemblerAggregationParameter TurnDisplacementsTableTreatment TurnPredictionAssembler TwoEndsDomain TwoEndsDraggableDomain TwoResidueLineDrawing TypeMismatchException UIStates UninitializedSessionError UninitializedSessionError UniqueResidueModelFactory UnknownSequence UnknownSequenceHelper UnknownSequenceHolder UnsupportedColumnTypeException UnsupportedFileFormatException UnsupportedFormat UnsupportedFormatException UnsupportedOrganism UnsupportedOrigin UnsupportedResidueType Updateable UpdateProfileForm UpdateScheme UpgradableObject UploadAlignment UploadAlnFile UploadFile UploadXMLFile ureter Url URL_Annotation UrlDescriptor URLRepository URLRepositoryImpl URLTestNode URLTestPage URLTestProcessing urogenital UserColorInputEditor UserColorInputForm UserColors UserDirectory UserDirectory UserDirectory_JDBC_Impl UserDirectory_Serialization_Impl UserDriver UserRecord UserRecordImpl UserSession uterus vagina vagus_nerve ValidateSubmission ValueComparator ValueCopier vas_deferens vascular vein ventricle vesicular_gland Viewer ViewLayout visual_cortex vocal_cord vomeronasal_organ vulva WebService white_adipose white_blood_cell WildType_Protein WildType_ProteinDescriptor WildTypeProtein WizardSubmission worker WrapperFailed WrongArgumentTypeException WrongFileFormatException WTPSorter XMLBlastHSIterator XMLGenerator XMLSubmission XMLValidator XMLVersionNotSupportedException _SequenceRepositoryImplBase